Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   ABGT19_RS16160 Genome accession   NZ_CP156993
Coordinates   3010219..3011082 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain AR03-27     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005219..3016082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT19_RS16135 (ABGT19_16135) comA 3005528..3006172 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ABGT19_RS16140 (ABGT19_16140) comP 3006253..3008214 (-) 1962 WP_276569535.1 histidine kinase Regulator
  ABGT19_RS16145 (ABGT19_16145) - 3008397..3009521 (+) 1125 WP_031601042.1 IS4-like element IS4Bsu1 family transposase -
  ABGT19_RS16150 (ABGT19_16150) - 3009651..3009980 (-) 330 WP_322808282.1 hypothetical protein -
  ABGT19_RS16155 (ABGT19_16155) comX 3009996..3010217 (-) 222 WP_014480704.1 competence pheromone ComX -
  ABGT19_RS16160 (ABGT19_16160) comQ 3010219..3011082 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  ABGT19_RS16165 (ABGT19_16165) degQ 3011267..3011407 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ABGT19_RS16170 (ABGT19_16170) - 3011629..3011754 (+) 126 WP_003228793.1 hypothetical protein -
  ABGT19_RS16175 (ABGT19_16175) - 3011868..3012236 (+) 369 WP_014477834.1 hypothetical protein -
  ABGT19_RS16180 (ABGT19_16180) pdeH 3012212..3013441 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  ABGT19_RS16185 (ABGT19_16185) pncB 3013577..3015049 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  ABGT19_RS16190 (ABGT19_16190) pncA 3015065..3015616 (-) 552 WP_014480709.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=900960 ABGT19_RS16160 WP_014480705.1 3010219..3011082(-) (comQ) [Bacillus subtilis strain AR03-27]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=900960 ABGT19_RS16160 WP_014480705.1 3010219..3011082(-) (comQ) [Bacillus subtilis strain AR03-27]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439