Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HK937_RS06015 Genome accession   NZ_CP137883
Coordinates   1165327..1166277 (+) Length   316 a.a.
NCBI ID   WP_041160151.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1149802..1169915 1165327..1166277 within 0


Gene organization within MGE regions


Location: 1149802..1169915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS05945 (HK937_0005945) pglI 1149802..1150731 (-) 930 WP_002935026.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  HK937_RS05950 (HK937_0005950) pglH 1150724..1151803 (-) 1080 WP_074484708.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  HK937_RS05955 (HK937_0005955) pglK 1151800..1153494 (-) 1695 WP_224385682.1 ABC-type lipopolysaccharide transporter PglK -
  HK937_RS05960 (HK937_0005960) galE 1153488..1154474 (-) 987 WP_070296706.1 UDP-glucose 4-epimerase GalE -
  HK937_RS05965 (HK937_0005965) - 1154532..1155326 (-) 795 WP_002883266.1 3'-5' exonuclease -
  HK937_RS05970 (HK937_0005970) waaC 1155392..1156420 (+) 1029 WP_070296705.1 lipopolysaccharide heptosyltransferase I -
  HK937_RS05975 (HK937_0005975) htrB 1156410..1157297 (+) 888 WP_070296704.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  HK937_RS05980 (HK937_0005980) - 1157294..1158061 (+) 768 Protein_1159 glycosyltransferase family 2 protein -
  HK937_RS05985 (HK937_0005985) - 1158054..1159115 (+) 1062 WP_070296702.1 glycosyltransferase family 4 protein -
  HK937_RS05990 (HK937_0005990) - 1159112..1159975 (-) 864 WP_224385683.1 glycosyltransferase family 2 protein -
  HK937_RS05995 (HK937_0005995) - 1159968..1161182 (-) 1215 WP_041160148.1 glycosyltransferase family 2 protein -
  HK937_RS06000 (HK937_0006000) - 1161175..1163106 (-) 1932 WP_052785346.1 hypothetical protein -
  HK937_RS06005 (HK937_0006005) - 1163529..1164455 (+) 927 WP_224385684.1 DUF2972 domain-containing protein -
  HK937_RS06010 (HK937_0006010) - 1164419..1165268 (-) 850 Protein_1165 glycosyltransferase family 2 protein -
  HK937_RS06015 (HK937_0006015) waaF 1165327..1166277 (+) 951 WP_041160151.1 lipopolysaccharide heptosyltransferase II Regulator
  HK937_RS06020 (HK937_0006020) - 1166263..1167027 (-) 765 WP_002899462.1 glycosyltransferase family 25 protein -
  HK937_RS06025 (HK937_0006025) gmhA 1167027..1167587 (-) 561 WP_041160152.1 D-sedoheptulose 7-phosphate isomerase -
  HK937_RS06030 (HK937_0006030) rfaE1 1167584..1168969 (-) 1386 WP_002868598.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  HK937_RS06035 (HK937_0006035) rfaD 1168962..1169915 (-) 954 WP_002860242.1 ADP-glyceromanno-heptose 6-epimerase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36292.91 Da        Isoelectric Point: 10.2419

>NTDB_id=900959 HK937_RS06015 WP_041160151.1 1165327..1166277(+) (waaF) [Campylobacter jejuni subsp. jejuni strain P4549]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKIKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=900959 HK937_RS06015 WP_041160151.1 1165327..1166277(+) (waaF) [Campylobacter jejuni subsp. jejuni strain P4549]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCATATAAGTGCGGTCTATAAGATAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.541

99.367

0.949