Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LDP65_RS12405 Genome accession   NZ_AP025152
Coordinates   2774938..2776329 (-) Length   463 a.a.
NCBI ID   WP_101111489.1    Uniprot ID   -
Organism   Vibrio penaeicida strain TUMSAT-OK1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2769938..2781329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP65_RS12370 moaE 2770579..2771034 (-) 456 WP_126606780.1 molybdopterin synthase catalytic subunit MoaE -
  LDP65_RS12375 moaD 2771038..2771283 (-) 246 WP_126606781.1 molybdopterin synthase sulfur carrier subunit -
  LDP65_RS12380 moaC 2771283..2771759 (-) 477 WP_126606782.1 cyclic pyranopterin monophosphate synthase MoaC -
  LDP65_RS12385 moaB 2771770..2772282 (-) 513 WP_101111493.1 molybdenum cofactor biosynthesis protein B -
  LDP65_RS12390 moaA 2772349..2773341 (-) 993 WP_126606783.1 GTP 3',8-cyclase MoaA -
  LDP65_RS12395 yvcK 2773684..2774571 (+) 888 WP_126606784.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  LDP65_RS12400 - 2774560..2774907 (-) 348 WP_101111490.1 Hpt domain-containing protein -
  LDP65_RS12405 luxO 2774938..2776329 (-) 1392 WP_101111489.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LDP65_RS12410 uvrB 2776600..2778630 (-) 2031 WP_126606786.1 excinuclease ABC subunit UvrB -
  LDP65_RS12415 - 2779299..2779562 (-) 264 WP_185829735.1 phage protease -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51118.34 Da        Isoelectric Point: 5.5249

>NTDB_id=90084 LDP65_RS12405 WP_101111489.1 2774938..2776329(-) (luxO) [Vibrio penaeicida strain TUMSAT-OK1]
MQDTTTNPNPKYLLMVEDTASVAALYRSYLNPLGLDITIVGTGIDAIKSLEKRTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVTVNNALRKAGKLRSPTSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASLFITGESGTGKEVCAEAIHAASKRGDSPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRNR
GEDVVEIAYSLLGHMSHEEGKGFVRFSQQVLDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSELK
QANATDSISTKLSIEEIRPLWLTEKSAIEQAIEACEGNIPKAAGHLDVSPSTLYRKLQTWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=90084 LDP65_RS12405 WP_101111489.1 2774938..2776329(-) (luxO) [Vibrio penaeicida strain TUMSAT-OK1]
ATGCAAGACACAACAACTAATCCGAATCCAAAATATCTTCTCATGGTAGAAGATACCGCTTCGGTTGCAGCGTTATACCG
ATCCTATCTTAATCCACTTGGCTTGGATATTACTATTGTCGGGACGGGAATAGATGCAATAAAAAGTCTCGAAAAGCGAA
CTCCTGATCTCATTTTACTCGACTTACGCCTACCTGATATGACCGGGATGGATGTCCTTTCGTCAGTAAAGTCCAATTAC
CCTGATGTTCCTGTCATCTTTATGACTGCGCATGGTTCAATAGATACCGCAGTTGAAGCGATGAGAAAGGGGGCTCAGGA
TTTCCTTATTAAGCCATGTGAAGCAGATAGGCTTCGTGTCACGGTTAATAATGCTCTTCGAAAAGCTGGAAAGTTGCGTT
CTCCAACCAGTGAACCTGATAACAACTATCAAGGCTTTATTGGCAGTAGCCAGACCATGCAGGCGGTTTATCGAACGATA
GATTCCGCAGCTCCTAGTAAAGCTTCACTTTTCATCACTGGGGAAAGTGGTACGGGTAAAGAGGTGTGTGCTGAAGCCAT
ACACGCTGCGAGTAAACGTGGTGATAGTCCTTTTATCGCGATCAACTGTGCTGCCATCCCTAAAGATCTTATAGAAAGTG
AGCTTTTTGGTCATGTTAAAGGTGCCTTTACAGGTGCATCAACGGATAGGCAAGGTGCAGCAGAGTTAGCTGATGGTGGA
ACTCTATTCTTGGATGAATTGTGTGAGATGGACTTGGATCTTCAAACCAAGCTGCTTCGATTTATCCAAACGGGTACTTT
TCAAAAAGTGGGTTCTTCCAAAATGAAAAGTGTGGATGTGCGTTTTGTATGTGCAACCAACCGTGACCCATGGAAAGAAG
TGCAAGAAGGGCGTTTTCGTGAGGATTTGTATTACCGACTTTATGTCATTCCGTTGCATTTACCACCGTTGAGAAACCGT
GGGGAAGATGTAGTCGAAATTGCGTATTCATTACTTGGGCATATGTCTCATGAAGAAGGGAAAGGTTTTGTACGTTTTTC
CCAGCAAGTACTCGATAAATTTATTGAGTACGAATGGCCTGGTAACGTTCGTCAGTTGCAGAACGTGCTGCGTAATGCCG
TGGTACTTAACCATGGGAGTGAGATCACACTTAATATGCTACCGCCACCCTTAAATTTGCCTTCGGTATCAGAATTGAAA
CAAGCGAATGCAACCGACTCAATTTCAACTAAACTCTCTATAGAAGAAATACGACCACTTTGGCTTACTGAAAAAAGTGC
GATAGAGCAAGCAATTGAAGCCTGTGAAGGTAATATTCCGAAGGCAGCAGGTCATCTAGACGTCAGTCCGTCTACGTTGT
ATCGCAAGCTGCAAACTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

81.737

96.976

0.793
  pilR Pseudomonas aeruginosa PAK

39.686

96.328

0.382

Multiple sequence alignment