Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABGT21_RS05255 Genome accession   NZ_CP156990
Coordinates   1008070..1008717 (+) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis strain AR02-06     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003070..1013717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT21_RS05240 (ABGT21_05240) glpD 1003241..1004908 (+) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -
  ABGT21_RS05245 (ABGT21_05245) pgcA 1005040..1006785 (+) 1746 WP_014479288.1 phosphoglucomutase -
  ABGT21_RS05250 (ABGT21_05250) yhcY 1006934..1008073 (+) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  ABGT21_RS05255 (ABGT21_05255) vraR 1008070..1008717 (+) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  ABGT21_RS05260 (ABGT21_05260) yhdA 1008714..1009238 (+) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  ABGT21_RS05265 (ABGT21_05265) yhdB 1009253..1009495 (-) 243 WP_003233373.1 YhdB family protein -
  ABGT21_RS05270 (ABGT21_05270) yhdC 1009696..1010019 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  ABGT21_RS05275 (ABGT21_05275) lytF 1010061..1011521 (-) 1461 WP_014479292.1 peptidoglycan endopeptidase LytF -
  ABGT21_RS05280 (ABGT21_05280) nsrR 1011675..1012115 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=900720 ABGT21_RS05255 WP_014479290.1 1008070..1008717(+) (vraR) [Bacillus subtilis strain AR02-06]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=900720 ABGT21_RS05255 WP_014479290.1 1008070..1008717(+) (vraR) [Bacillus subtilis strain AR02-06]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409