Detailed information NTG0900600

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: R5H22_RS05935
• Genome accession: NZ_CP137764
• Coordinates: 1276663..1278873 (+)
• Length: 736 a.a.
• NCBI ID: WP_156483617.1
• Uniprot ID: -
• Organism: Azotobacter sp. NL3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1271663..1283873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5H22_RS05910 (R5H22_05910)	-	1271817..1272539 (-)	723	WP_012700103.1	glycerophosphodiester phosphodiesterase	-
R5H22_RS05915 (R5H22_05915)	-	1272787..1274037 (+)	1251	WP_012700104.1	lipoprotein-releasing ABC transporter permease subunit	-
R5H22_RS05920 (R5H22_05920)	lolD	1274030..1274728 (+)	699	WP_012700105.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
R5H22_RS05925 (R5H22_05925)	-	1274731..1275975 (+)	1245	WP_012700106.1	lipoprotein-releasing ABC transporter permease subunit	-
R5H22_RS05930 (R5H22_05930)	-	1276000..1276527 (-)	528	WP_012700107.1	DUF2062 domain-containing protein	-
R5H22_RS05935 (R5H22_05935)	comA	1276663..1278873 (+)	2211	WP_156483617.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
R5H22_RS05940 (R5H22_05940)	-	1278945..1279577 (+)	633	WP_041807047.1	MotA/TolQ/ExbB proton channel family protein	-
R5H22_RS05945 (R5H22_05945)	-	1279574..1280002 (+)	429	WP_012700110.1	biopolymer transporter ExbD	-
R5H22_RS05950 (R5H22_05950)	lpxK	1280002..1281003 (+)	1002	WP_012700111.1	tetraacyldisaccharide 4'-kinase	-
R5H22_RS05955 (R5H22_05955)	-	1281064..1281249 (+)	186	WP_012700112.1	Trm112 family protein	-
R5H22_RS05960 (R5H22_05960)	kdsB	1281246..1282010 (+)	765	WP_012700113.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
R5H22_RS05965 (R5H22_05965)	-	1282010..1282474 (+)	465	WP_012700114.1	low molecular weight protein-tyrosine-phosphatase	-
R5H22_RS05970 (R5H22_05970)	murB	1282471..1283490 (+)	1020	WP_012700115.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79919.77 Da
• Isoelectric Point: 10.2397

>NTDB_id=900600 R5H22_RS05935 WP_156483617.1 1276663..1278873(+) (comA) [Azotobacter sp. NL3]
MLALTAGLLVLRFLPALPPWWLWSPMALGAAILLAARRYSPALFLFGLGWACLSAHWALEERLPVELDGRTLWLEGLVVG
LPARIDGTLHFQLEEASSRRAELPGRLRLAWHAGPEVRAGERWRLAVSLKRPRGLVNPQGFDYEAWLLAQRIGATGTVKA
GERLGTPENADGWRDSLRQRLLQVDAHGREGALAALVMGDASGLSVADWKLLQDTGTVHLMVISGQHVGLLAGLVYGLVV
LLARFGLWPGFLPWLPCACGLAFATALGYGWLAGFGVPVQRACAMLAVVLFWRLRFRHLGLWLPILLALDGVLLLEPLAS
LQPGFWLSFGAVVILVLAFGGRLGAWSWRQTLWRAQWTSALGLLPLLLALGLPISLSGPLANLVAVPWVGFAVVPLALLG
TLLLPLPAMGEGLLWLAGALLETLFRLLGEIAGAVPAWLPHAVPVWGWLLALLGTLLILLPAGVPLRVPGLALLLPLAFP
PQERIPQARADVWLLDVGQGLAVLVRTRGHDLLYDAGPRFGDFDLGERVVLPSLRNLGVGRLDRLLLSHADGDHAGGALA
VRRALPVGEVVAGEAQAQSAALAAQPCARRAWQWDGVRFATWHWTAVQEGNRASCVLLVEAAGERLLLTGDIDAAAERAL
LDSHPEWRADWLLAPHHGSRSSSSPALLKALAPRAVLISRGWNNGFGHPHAQVVERYRKLPAVIHDTARQGALRFRLGDW
GRARGLREEPRFWREK

Nucleotide

• Length: 2211 bp

>NTDB_id=900600 R5H22_RS05935 WP_156483617.1 1276663..1278873(+) (comA) [Azotobacter sp. NL3]
ATGTTGGCGCTCACCGCAGGTCTGCTCGTCCTGCGTTTCCTTCCGGCCCTACCGCCCTGGTGGCTGTGGTCGCCGATGGC
GCTGGGCGCTGCGATCCTTCTGGCGGCGCGTCGCTATTCGCCGGCGCTCTTTCTCTTCGGTCTCGGCTGGGCCTGCCTGT
CGGCGCACTGGGCGCTGGAGGAACGGTTGCCTGTCGAACTCGATGGTCGCACCCTGTGGCTGGAGGGGCTGGTGGTCGGT
CTGCCGGCGCGCATCGACGGCACGCTGCATTTCCAACTGGAGGAGGCCTCTTCCCGGCGCGCCGAACTGCCCGGGCGACT
GCGCCTAGCGTGGCACGCCGGGCCGGAGGTCCGCGCCGGGGAGCGCTGGCGCCTGGCGGTCAGCCTCAAGCGTCCGCGCG
GCCTGGTCAACCCGCAGGGTTTCGATTACGAGGCCTGGCTGCTGGCCCAGCGGATCGGCGCCACCGGGACGGTGAAAGCG
GGAGAGCGACTCGGAACGCCGGAAAACGCCGACGGTTGGCGCGATTCCCTGCGCCAGCGCCTGCTGCAGGTCGATGCCCA
TGGCCGTGAGGGCGCGCTCGCCGCGCTGGTGATGGGCGACGCGTCCGGGCTGAGCGTGGCGGACTGGAAGCTCCTGCAGG
ATACCGGCACCGTGCATCTGATGGTGATCTCCGGCCAGCATGTCGGCCTGCTTGCCGGCCTGGTCTACGGGCTGGTGGTC
CTGCTGGCGAGATTTGGCCTGTGGCCGGGTTTTCTGCCCTGGTTGCCCTGTGCCTGCGGCCTGGCCTTCGCCACCGCGCT
CGGTTATGGCTGGCTGGCCGGCTTCGGGGTACCAGTACAGCGGGCCTGCGCCATGCTCGCCGTGGTGCTGTTCTGGCGCC
TGCGTTTCCGCCACCTGGGTCTCTGGCTACCCATCCTGCTGGCGCTGGACGGCGTACTGCTGCTCGAGCCCCTGGCCAGC
CTGCAGCCGGGGTTCTGGCTGTCGTTCGGTGCGGTGGTGATCCTCGTCCTGGCCTTCGGCGGCCGGCTGGGTGCCTGGTC
GTGGCGGCAGACCCTGTGGCGAGCGCAGTGGACCAGTGCGCTGGGACTGCTACCGTTGTTGCTGGCCTTGGGCCTGCCGA
TCAGTCTCAGCGGTCCGTTGGCCAATCTGGTCGCGGTACCCTGGGTCGGTTTCGCGGTGGTCCCGCTGGCTCTGCTCGGA
ACCCTGCTGCTGCCCTTGCCGGCAATGGGCGAGGGCCTTCTCTGGCTGGCCGGCGCCTTGCTGGAGACGCTGTTTCGGCT
GCTCGGCGAGATCGCCGGCGCCGTACCGGCCTGGCTGCCCCACGCGGTGCCGGTCTGGGGCTGGCTGCTGGCGCTGCTCG
GGACCCTGCTGATCCTGCTGCCGGCGGGAGTGCCGCTGCGTGTCCCGGGACTGGCGCTGCTGCTGCCCCTGGCATTTCCG
CCGCAGGAGCGAATCCCGCAGGCACGGGCCGATGTCTGGCTGCTGGATGTCGGGCAGGGCCTTGCCGTGCTTGTGCGTAC
CCGCGGGCACGACCTGCTCTATGATGCTGGGCCGCGTTTCGGCGATTTCGATCTGGGCGAGCGCGTGGTCCTGCCTTCGC
TGCGCAATCTCGGCGTGGGCCGCCTGGATCGCCTGCTGCTCAGCCATGCCGATGGCGACCACGCCGGTGGCGCCCTGGCC
GTGCGGCGCGCTCTGCCGGTGGGCGAGGTCGTCGCCGGCGAGGCGCAGGCGCAATCGGCGGCGCTCGCCGCGCAGCCTTG
CGCCCGTCGCGCCTGGCAGTGGGATGGTGTGCGTTTCGCCACCTGGCACTGGACGGCCGTGCAAGAGGGCAATCGGGCTT
CCTGCGTGCTGCTGGTCGAGGCCGCCGGCGAGCGCCTGCTGCTGACCGGCGATATCGATGCCGCAGCCGAGCGGGCACTG
CTCGACAGCCACCCGGAGTGGCGCGCCGACTGGCTGCTGGCGCCTCACCACGGCAGCCGCAGTTCGTCTTCGCCGGCTCT
GCTCAAGGCCCTGGCGCCGCGCGCGGTGCTGATCTCGCGCGGCTGGAACAACGGCTTCGGCCATCCCCATGCGCAGGTCG
TGGAGCGTTACCGGAAGCTGCCGGCCGTGATTCACGATACTGCGCGCCAGGGGGCCCTGCGGTTTCGCCTGGGCGACTGG
GGCCGGGCGCGCGGGCTGCGCGAAGAGCCCCGCTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-461)

• Domain of unknown function (DUF4131) (DUF4131) (18-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	65.912	96.06	0.633
comA	Ralstonia pseudosolanacearum GMI1000	34.814	100	0.394