Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABJ99_RS06265 Genome accession   NZ_AP027764
Coordinates   1285871..1286608 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2017-02-2CC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280871..1291608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ99_RS06240 (VEE76_11970) tyrA 1281865..1282986 (+) 1122 WP_000225210.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABJ99_RS06245 (VEE76_11980) pheA 1283029..1284189 (-) 1161 WP_032184936.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABJ99_RS06250 pheL 1284288..1284335 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AABJ99_RS06255 (VEE76_11990) raiA 1284439..1284780 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABJ99_RS06260 (VEE76_12000) - 1285040..1285750 (-) 711 Protein_1223 IS4 family transposase -
  AABJ99_RS06265 (VEE76_12020) comL 1285871..1286608 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABJ99_RS06270 (VEE76_12030) rluD 1286743..1287723 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABJ99_RS06275 (VEE76_12040) yfiH 1287720..1288451 (+) 732 WP_000040132.1 purine nucleoside phosphorylase YfiH -
  AABJ99_RS06280 (VEE76_12050) clpC 1288581..1291154 (+) 2574 WP_002431841.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=90060 AABJ99_RS06265 WP_000197686.1 1285871..1286608(-) (comL) [Escherichia coli strain 2017-02-2CC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=90060 AABJ99_RS06265 WP_000197686.1 1285871..1286608(-) (comL) [Escherichia coli strain 2017-02-2CC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTACAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment