Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   R2H34_RS15100 Genome accession   NZ_CP137746
Coordinates   3113028..3113555 (-) Length   175 a.a.
NCBI ID   WP_075696027.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3108028..3118555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS15080 - 3108250..3109128 (-) 879 WP_318342340.1 hypothetical protein -
  R2H34_RS15085 aroB 3109145..3110227 (-) 1083 WP_004964593.1 3-dehydroquinate synthase -
  R2H34_RS15090 aroK 3110248..3110808 (-) 561 WP_004909618.1 shikimate kinase AroK -
  R2H34_RS15095 pilQ 3110828..3113011 (-) 2184 WP_412176804.1 type IV pilus secretin PilQ Machinery gene
  R2H34_RS15100 pilP 3113028..3113555 (-) 528 WP_075696027.1 pilus assembly protein PilP Machinery gene
  R2H34_RS15105 pilO 3113555..3114295 (-) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  R2H34_RS15110 pilN 3114292..3114936 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  R2H34_RS15115 pilM 3114936..3115994 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19402.61 Da        Isoelectric Point: 8.4615

>NTDB_id=900517 R2H34_RS15100 WP_075696027.1 3113028..3113555(-) (pilP) [Acinetobacter sp. 16]
MNNCKLLFSFMAGLVLVGCDSKIDAVNQKMAEIRNEPTLPIEPAPVFSPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKQ
VYPNFNRQPQPLESYALESLNMKGSMRGKTNETIALIQTPDRQIERVQVGNYLGMNQGRVVKISPTQIDLVEIVPDGRDG
YVERPRTLVLIGMAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=900517 R2H34_RS15100 WP_075696027.1 3113028..3113555(-) (pilP) [Acinetobacter sp. 16]
ATGAATAATTGTAAATTATTGTTTAGTTTTATGGCTGGGCTTGTTTTGGTTGGATGTGATTCAAAAATTGATGCTGTAAA
CCAAAAAATGGCTGAAATTCGGAACGAACCTACTTTACCTATTGAGCCAGCACCAGTATTTAGTCCCGTACCATTATTTA
ACTATTCAGCACATCAATTGAAAAGTCCATTTATGCCAAGCTCATTGGCGGCTGAGTTGAAAATAATGGCGGGTAAACAG
GTTTATCCAAATTTCAATCGTCAACCGCAACCACTTGAAAGTTATGCGTTGGAATCCCTAAATATGAAGGGTAGCATGCG
TGGTAAAACAAATGAAACGATAGCACTGATTCAGACCCCGGACCGACAAATTGAGCGGGTGCAGGTTGGAAATTACTTAG
GAATGAATCAAGGTCGAGTGGTAAAAATTAGTCCGACTCAAATTGATTTGGTGGAAATTGTACCAGATGGGCGTGATGGT
TATGTGGAGAGACCAAGAACACTCGTTCTAATTGGTATGGCACCATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

78.947

97.714

0.771
  comL Acinetobacter baylyi ADP1

69.714

100

0.697