Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   R2H34_RS15110 Genome accession   NZ_CP137746
Coordinates   3114292..3114936 (-) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter sp. 16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3109292..3119936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS15090 aroK 3110248..3110808 (-) 561 WP_004909618.1 shikimate kinase AroK -
  R2H34_RS15095 pilQ 3110828..3113011 (-) 2184 WP_412176804.1 type IV pilus secretin PilQ Machinery gene
  R2H34_RS15100 pilP 3113028..3113555 (-) 528 WP_075696027.1 pilus assembly protein PilP Machinery gene
  R2H34_RS15105 pilO 3113555..3114295 (-) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  R2H34_RS15110 pilN 3114292..3114936 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  R2H34_RS15115 pilM 3114936..3115994 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  R2H34_RS15120 ponA 3116157..3118736 (+) 2580 WP_087539638.1 penicillin-binding protein PBP1a -
  R2H34_RS15125 - 3118751..3119569 (-) 819 WP_004964610.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=900519 R2H34_RS15110 WP_004909633.1 3114292..3114936(-) (pilN) [Acinetobacter sp. 16]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=900519 R2H34_RS15110 WP_004909633.1 3114292..3114936(-) (pilN) [Acinetobacter sp. 16]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTTGCTGCATTAGGTGTGGCATCGGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGTTTGCAAGGTCAAAGACCTGTCGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCTACCATGTATTTGACTAAATTTACACGTACAGGCGATAAGTTCACGATTGAAGGTAAAGCTGAAAGTC
CAAACACAGTAGCTGAATTACTGAGAAATCTTGAAGCATCACCTTGGTATCGCAACGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACCGTCAGCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGTACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72