Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   R2H34_RS01520 Genome accession   NZ_CP137746
Coordinates   327787..329352 (-) Length   521 a.a.
NCBI ID   WP_004917019.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 322787..334352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS01505 gpmI 323566..325110 (+) 1545 WP_005403526.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  R2H34_RS01510 - 325120..326295 (+) 1176 WP_005403527.1 S41 family peptidase -
  R2H34_RS01515 pilR 326334..327764 (-) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  R2H34_RS01520 pilS 327787..329352 (-) 1566 WP_004917019.1 sensor histidine kinase Regulator
  R2H34_RS01525 - 329368..330003 (-) 636 WP_004957336.1 response regulator -
  R2H34_RS01530 pbpG 330215..331276 (+) 1062 WP_005403528.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  R2H34_RS01535 - 331440..332054 (+) 615 WP_004957343.1 DUF6915 family protein -
  R2H34_RS01540 - 332078..332857 (+) 780 WP_004917012.1 hypothetical protein -
  R2H34_RS01545 thrC 332924..334063 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59218.20 Da        Isoelectric Point: 6.3690

>NTDB_id=900487 R2H34_RS01520 WP_004917019.1 327787..329352(-) (pilS) [Acinetobacter sp. 16]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYLLTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFNYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIQQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIQLSLPENLTILFDEKQLRQVLINLICNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=900487 R2H34_RS01520 WP_004917019.1 327787..329352(-) (pilS) [Acinetobacter sp. 16]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACCGTCTATAAGCTTGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATTTATTAACGGCTGAGCAATTAGCCTCAGACTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTGTACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAGCTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATTGGCGATTTCTTTAACTACAACAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGCAATCCTGCTGCCAATACTTTACTTGGAATTAATGTCCCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCTGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGCCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCAGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAACCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCAGCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTTTGGGGATGGCACGCA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCAACTCAGTTTGCCTGAAAATTTAACGATCCTGTTTGATGAAAAACAATTAAGACAAGTATTAATCAATCT
TATTTGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.504

99.04

0.649