Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABGV14_RS01005 Genome accession   NZ_CP156813
Coordinates   187266..187922 (+) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain PKF8     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 182266..192922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGV14_RS00970 dcyD 183145..184131 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  ABGV14_RS00975 tcyL 184146..184814 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABGV14_RS00980 tcyN 184811..185563 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABGV14_RS00985 sdiA 185793..186515 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  ABGV14_RS00990 yecF 186583..186807 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABGV14_RS00995 yecU 186794..186970 (-) 177 WP_001302050.1 protein YecU -
  ABGV14_RS01000 - 187008..187124 (-) 117 WP_001302039.1 hypothetical protein -
  ABGV14_RS01005 letA 187266..187922 (+) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABGV14_RS01010 uvrC 187919..189751 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABGV14_RS01015 pgsA 189808..190356 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABGV14_RS01035 yecA 191006..191671 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=900168 ABGV14_RS01005 WP_000611338.1 187266..187922(+) (letA) [Escherichia coli strain PKF8]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=900168 ABGV14_RS01005 WP_000611338.1 187266..187922(+) (letA) [Escherichia coli strain PKF8]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGCGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCAGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGCAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGTGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491