Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LDO90_RS12525 Genome accession   NZ_AP025147
Coordinates   2825168..2826559 (-) Length   463 a.a.
NCBI ID   WP_224067474.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15641     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2820168..2831559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS12490 moaE 2820809..2821264 (-) 456 WP_126606780.1 molybdopterin synthase catalytic subunit MoaE -
  LDO90_RS12495 moaD 2821268..2821513 (-) 246 WP_126606781.1 molybdopterin synthase sulfur carrier subunit -
  LDO90_RS12500 moaC 2821513..2821989 (-) 477 WP_126606782.1 cyclic pyranopterin monophosphate synthase MoaC -
  LDO90_RS12505 moaB 2822000..2822512 (-) 513 WP_101111493.1 molybdenum cofactor biosynthesis protein B -
  LDO90_RS12510 moaA 2822579..2823571 (-) 993 WP_126606783.1 GTP 3',8-cyclase MoaA -
  LDO90_RS12515 yvcK 2823914..2824801 (+) 888 WP_126606784.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  LDO90_RS12520 - 2824790..2825137 (-) 348 WP_101111490.1 Hpt domain-containing protein -
  LDO90_RS12525 luxO 2825168..2826559 (-) 1392 WP_224067474.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LDO90_RS12530 uvrB 2826830..2828860 (-) 2031 WP_126606786.1 excinuclease ABC subunit UvrB -
  LDO90_RS12535 - 2829529..2829792 (-) 264 WP_185829735.1 phage protease -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51134.38 Da        Isoelectric Point: 5.5249

>NTDB_id=89998 LDO90_RS12525 WP_224067474.1 2825168..2826559(-) (luxO) [Vibrio penaeicida strain IFO 15641]
MQDTTTNPNPKYLLMVEDTASVAALYRSYLNPLGLDITIVGTGIDAIKSLEKRTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKLCEADRLRVTVNNALRKAGKLRSPTSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASLFITGESGTGKEVCAEAIHAASKRGDSPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRNR
GEDVVEIAYSLLGHMSHEEGKGFVRFSQQVLDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSELK
QANATDSISTKLSIEEIRPLWLTEKSAIEQAIEACEGNIPKAAGHLDVSPSTLYRKLQTWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=89998 LDO90_RS12525 WP_224067474.1 2825168..2826559(-) (luxO) [Vibrio penaeicida strain IFO 15641]
ATGCAAGACACAACAACTAATCCGAATCCAAAATATCTTCTCATGGTAGAAGATACCGCTTCGGTTGCAGCGTTATACCG
ATCCTATCTTAATCCACTTGGCTTGGATATTACTATTGTCGGGACGGGAATAGATGCAATAAAAAGTCTCGAAAAGCGAA
CTCCTGATCTCATTTTACTCGACTTACGCCTACCTGATATGACCGGGATGGATGTCCTTTCGTCAGTAAAGTCCAATTAC
CCTGATGTTCCTGTCATCTTTATGACTGCGCATGGTTCAATAGATACCGCAGTTGAAGCGATGAGAAAGGGGGCTCAGGA
TTTCCTTATTAAGCTATGTGAAGCAGATAGGCTTCGTGTCACGGTTAATAATGCTCTTCGAAAAGCTGGAAAGTTGCGTT
CTCCAACCAGTGAACCTGATAACAACTATCAAGGCTTTATTGGCAGTAGCCAGACCATGCAGGCGGTTTATCGAACGATA
GATTCCGCAGCTCCTAGTAAAGCTTCACTTTTCATCACTGGGGAAAGTGGTACGGGTAAAGAGGTGTGTGCTGAAGCCAT
ACACGCTGCGAGTAAACGTGGTGATAGTCCTTTTATCGCGATCAACTGTGCTGCCATCCCTAAAGATCTTATAGAAAGTG
AGCTTTTTGGTCATGTTAAAGGTGCCTTTACAGGTGCATCAACGGATAGGCAAGGTGCAGCAGAGTTAGCTGATGGTGGA
ACTCTATTCTTGGATGAATTGTGTGAGATGGACTTGGATCTTCAAACCAAGCTGCTTCGATTTATCCAAACGGGTACTTT
TCAAAAAGTGGGTTCTTCCAAAATGAAAAGTGTGGATGTGCGTTTTGTATGTGCAACCAACCGTGACCCATGGAAAGAAG
TGCAAGAAGGGCGTTTTCGTGAGGATTTGTATTACCGACTTTATGTCATTCCGTTGCATTTACCACCGTTGAGAAACCGT
GGGGAAGATGTAGTCGAAATTGCGTATTCATTACTTGGGCATATGTCTCATGAAGAAGGGAAAGGTTTTGTACGTTTTTC
CCAGCAAGTACTCGATAAATTTATTGAGTACGAATGGCCTGGTAACGTTCGTCAGTTGCAGAACGTGCTGCGTAATGCCG
TGGTACTTAACCATGGGAGTGAGATCACACTTAATATGCTACCGCCACCCTTAAATTTGCCTTCGGTATCAGAATTGAAA
CAAGCGAATGCAACCGACTCAATTTCAACTAAACTCTCTATAGAAGAAATACGACCACTTTGGCTTACTGAAAAAAGTGC
GATAGAGCAAGCAATTGAAGCCTGTGAAGGTAATATTCCGAAGGCAGCAGGTCATCTAGACGTCAGTCCGTCTACGTTGT
ATCGCAAGCTGCAAACTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

81.514

96.976

0.79
  pilR Pseudomonas aeruginosa PAK

39.462

96.328

0.38

Multiple sequence alignment