Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   R6I10_RS13395 Genome accession   NZ_CP137695
Coordinates   2556849..2557280 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS382     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551849..2562280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I10_RS13345 (R6I10_13345) sinI 2552043..2552216 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  R6I10_RS13350 (R6I10_13350) sinR 2552250..2552585 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  R6I10_RS13355 (R6I10_13355) tasA 2552678..2553463 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  R6I10_RS13360 (R6I10_13360) sipW 2553527..2554099 (-) 573 WP_003246088.1 signal peptidase I SipW -
  R6I10_RS13365 (R6I10_13365) tapA 2554083..2554844 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  R6I10_RS13370 (R6I10_13370) yqzG 2555116..2555442 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  R6I10_RS13375 (R6I10_13375) spoIITA 2555484..2555663 (-) 180 WP_003230176.1 YqzE family protein -
  R6I10_RS13380 (R6I10_13380) comGG 2555734..2556108 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  R6I10_RS13385 (R6I10_13385) comGF 2556109..2556492 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  R6I10_RS13390 (R6I10_13390) comGE 2556518..2556865 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  R6I10_RS13395 (R6I10_13395) comGD 2556849..2557280 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  R6I10_RS13400 (R6I10_13400) comGC 2557270..2557566 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  R6I10_RS13405 (R6I10_13405) comGB 2557580..2558617 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  R6I10_RS13410 (R6I10_13410) comGA 2558604..2559674 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  R6I10_RS13415 (R6I10_13415) corA 2560086..2561039 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=899883 R6I10_RS13395 WP_004398628.1 2556849..2557280(-) (comGD) [Bacillus subtilis isolate FELIX_MS382]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=899883 R6I10_RS13395 WP_004398628.1 2556849..2557280(-) (comGD) [Bacillus subtilis isolate FELIX_MS382]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1