Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | R7892_RS00820 | Genome accession | NZ_CP137688 |
| Coordinates | 167751..168305 (+) | Length | 184 a.a. |
| NCBI ID | WP_216547288.1 | Uniprot ID | - |
| Organism | Ligilactobacillus murinus strain KD6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 139761..200467 | 167751..168305 | within | 0 |
Gene organization within MGE regions
Location: 139761..200467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R7892_RS00740 (R7892_00740) | - | 149253..151151 (+) | 1899 | WP_318239697.1 | hypothetical protein | - |
| R7892_RS00745 (R7892_00745) | - | 151271..152224 (-) | 954 | Protein_140 | SdrD B-like domain-containing protein | - |
| R7892_RS00750 (R7892_00750) | - | 152313..152720 (+) | 408 | WP_318239698.1 | hypothetical protein | - |
| R7892_RS10915 | - | 152933..153049 (-) | 117 | Protein_142 | KxYKxGKxW signal peptide domain-containing protein | - |
| R7892_RS00755 (R7892_00755) | - | 153495..154421 (+) | 927 | WP_289190525.1 | NADPH-dependent FMN reductase | - |
| R7892_RS00760 (R7892_00760) | - | 154421..155392 (+) | 972 | WP_289190526.1 | FAD:protein FMN transferase | - |
| R7892_RS00765 (R7892_00765) | - | 155515..156351 (-) | 837 | WP_010690081.1 | YidC/Oxa1 family membrane protein insertase | - |
| R7892_RS00770 (R7892_00770) | rnpA | 156363..156719 (-) | 357 | WP_004049716.1 | ribonuclease P protein component | - |
| R7892_RS00775 (R7892_00775) | rpmH | 156785..156919 (-) | 135 | WP_003701411.1 | 50S ribosomal protein L34 | - |
| R7892_RS00780 (R7892_00780) | dnaA | 157438..158784 (+) | 1347 | WP_289190528.1 | chromosomal replication initiator protein DnaA | - |
| R7892_RS00785 (R7892_00785) | dnaN | 158959..160098 (+) | 1140 | WP_289190529.1 | DNA polymerase III subunit beta | - |
| R7892_RS00790 (R7892_00790) | yaaA | 160348..160572 (+) | 225 | WP_318239699.1 | S4 domain-containing protein YaaA | - |
| R7892_RS00795 (R7892_00795) | recF | 160581..161798 (+) | 1218 | WP_318239700.1 | DNA replication/repair protein RecF | - |
| R7892_RS00800 (R7892_00800) | gyrB | 161819..163777 (+) | 1959 | WP_137420738.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| R7892_RS00805 (R7892_00805) | gyrA | 163887..166349 (+) | 2463 | WP_289190531.1 | DNA gyrase subunit A | - |
| R7892_RS00810 (R7892_00810) | - | 166448..167083 (-) | 636 | WP_289190532.1 | NAD(P)-dependent oxidoreductase | - |
| R7892_RS00815 (R7892_00815) | rpsF | 167424..167714 (+) | 291 | WP_004049701.1 | 30S ribosomal protein S6 | - |
| R7892_RS00820 (R7892_00820) | ssb | 167751..168305 (+) | 555 | WP_216547288.1 | single-stranded DNA-binding protein | Machinery gene |
| R7892_RS00825 (R7892_00825) | rpsR | 168327..168563 (+) | 237 | WP_003695889.1 | 30S ribosomal protein S18 | - |
| R7892_RS00830 (R7892_00830) | - | 169123..169653 (-) | 531 | WP_289190533.1 | hypothetical protein | - |
| R7892_RS00835 (R7892_00835) | - | 169814..170020 (+) | 207 | WP_289190534.1 | hypothetical protein | - |
| R7892_RS00840 (R7892_00840) | - | 170107..171090 (-) | 984 | WP_289190535.1 | DUF1002 domain-containing protein | - |
| R7892_RS00845 (R7892_00845) | pnuC | 171369..172139 (+) | 771 | WP_137420745.1 | nicotinamide riboside transporter PnuC | - |
| R7892_RS00850 (R7892_00850) | - | 172380..174395 (+) | 2016 | WP_318239701.1 | DHH family phosphoesterase | - |
| R7892_RS00855 (R7892_00855) | rplI | 174423..174872 (+) | 450 | WP_318239702.1 | 50S ribosomal protein L9 | - |
| R7892_RS00860 (R7892_00860) | - | 174944..176104 (-) | 1161 | WP_318239703.1 | ImmA/IrrE family metallo-endopeptidase | - |
| R7892_RS00865 (R7892_00865) | - | 176661..177554 (+) | 894 | WP_318239704.1 | ABC transporter ATP-binding protein | - |
| R7892_RS00870 (R7892_00870) | - | 177558..178466 (+) | 909 | WP_318239705.1 | ABC transporter permease | - |
| R7892_RS00875 (R7892_00875) | - | 178490..179374 (-) | 885 | WP_318239706.1 | LysR family transcriptional regulator | - |
| R7892_RS00880 (R7892_00880) | - | 179497..180417 (+) | 921 | WP_318239707.1 | DMT family transporter | - |
| R7892_RS00885 (R7892_00885) | - | 180508..181134 (-) | 627 | WP_318239708.1 | XRE family transcriptional regulator | - |
| R7892_RS00890 (R7892_00890) | - | 181281..181487 (+) | 207 | WP_135942522.1 | hypothetical protein | - |
| R7892_RS00895 (R7892_00895) | - | 181484..181738 (+) | 255 | WP_153551214.1 | hypothetical protein | - |
| R7892_RS00900 (R7892_00900) | - | 181809..183893 (+) | 2085 | WP_318239709.1 | glycoside hydrolase domain-containing protein | - |
| R7892_RS00905 (R7892_00905) | - | 185424..186041 (-) | 618 | WP_318239710.1 | hypothetical protein | - |
| R7892_RS00910 (R7892_00910) | - | 186195..187760 (+) | 1566 | WP_318239711.1 | ABC transporter ATP-binding protein | - |
| R7892_RS00915 (R7892_00915) | - | 187757..189421 (+) | 1665 | WP_318239712.1 | ABC transporter ATP-binding protein | - |
| R7892_RS00920 (R7892_00920) | dnaB | 189526..190914 (+) | 1389 | WP_278876118.1 | replicative DNA helicase | - |
| R7892_RS00925 (R7892_00925) | asnB | 190983..192860 (+) | 1878 | WP_278876116.1 | asparagine synthase (glutamine-hydrolyzing) | - |
| R7892_RS00930 (R7892_00930) | - | 193464..194318 (-) | 855 | WP_318239713.1 | hypothetical protein | - |
| R7892_RS00935 (R7892_00935) | - | 194539..194685 (+) | 147 | WP_318239714.1 | type A2 lanthipeptide | - |
| R7892_RS00940 (R7892_00940) | - | 194777..197596 (+) | 2820 | WP_318239715.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| R7892_RS00945 (R7892_00945) | - | 197593..199722 (+) | 2130 | WP_318239716.1 | peptidase domain-containing ABC transporter | - |
| R7892_RS00950 (R7892_00950) | - | 199727..200467 (+) | 741 | WP_289190556.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20118.82 Da Isoelectric Point: 4.6382
>NTDB_id=899774 R7892_RS00820 WP_216547288.1 167751..168305(+) (ssb) [Ligilactobacillus murinus strain KD6]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGNGFDTNTN
NSNNAADPFAGGQQIDISDDDLPF
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGNGFDTNTN
NSNNAADPFAGGQQIDISDDDLPF
Nucleotide
Download Length: 555 bp
>NTDB_id=899774 R7892_RS00820 WP_216547288.1 167751..168305(+) (ssb) [Ligilactobacillus murinus strain KD6]
TTGATCAATTCAGTTGTTCTAGTAGGTCGTTTGACCCGAGATCCTGAACTGCGCTATACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGCGTAATGT
GGCGTAAAGCAGCCGAAAACTTCGCTAACTTTACCCACAAAGGTTCCTTAGTTGGGATCGAAGGACGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACCAATGATGCTTTTGGTGGTAATGGTTTTGATACCAATACAAAC
AATAGTAACAATGCTGCTGATCCATTTGCCGGTGGTCAACAGATCGATATCTCGGATGATGACTTACCATTCTAA
TTGATCAATTCAGTTGTTCTAGTAGGTCGTTTGACCCGAGATCCTGAACTGCGCTATACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGCGTAATGT
GGCGTAAAGCAGCCGAAAACTTCGCTAACTTTACCCACAAAGGTTCCTTAGTTGGGATCGAAGGACGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACCAATGATGCTTTTGGTGGTAATGGTTTTGATACCAATACAAAC
AATAGTAACAATGCTGCTGATCCATTTGCCGGTGGTCAACAGATCGATATCTCGGATGATGACTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.622 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.684 |
100 |
0.576 |