Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   R6Y88_RS18975 Genome accession   NZ_CP137687
Coordinates   3722357..3722974 (+) Length   205 a.a.
NCBI ID   WP_015384132.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3717357..3727974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS18940 aroE 3718015..3718857 (+) 843 WP_015384136.1 shikimate dehydrogenase -
  R6Y88_RS18945 yhbY 3718851..3719141 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  R6Y88_RS18950 nadD 3719153..3719722 (+) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  R6Y88_RS18955 yqeK 3719712..3720272 (+) 561 WP_015483448.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  R6Y88_RS18960 rsfS 3720290..3720646 (+) 357 WP_014480315.1 ribosome silencing factor -
  R6Y88_RS18965 yqeM 3720643..3721386 (+) 744 WP_015384134.1 class I SAM-dependent methyltransferase -
  R6Y88_RS18970 comER 3721452..3722273 (-) 822 WP_004398597.1 late competence protein ComER -
  R6Y88_RS18975 comEA 3722357..3722974 (+) 618 WP_015384132.1 competence protein ComEA Machinery gene
  R6Y88_RS18980 comEB 3723041..3723610 (+) 570 WP_003229978.1 ComE operon protein 2 -
  R6Y88_RS18985 comEC 3723614..3725944 (+) 2331 WP_041517945.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6Y88_RS18990 yqzM 3725984..3726118 (-) 135 WP_003229983.1 YqzM family protein -
  R6Y88_RS18995 - 3726159..3726308 (+) 150 WP_003229985.1 hypothetical protein -
  R6Y88_RS19000 holA 3726348..3727391 (+) 1044 WP_015384130.1 DNA polymerase III subunit delta -
  R6Y88_RS19005 rpsT 3727406..3727672 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21744.44 Da        Isoelectric Point: 4.7155

>NTDB_id=899757 R6Y88_RS18975 WP_015384132.1 3722357..3722974(+) (comEA) [Bacillus subtilis strain YT-4]
MNWLNQHKKAIVLAASAAVFTAIMIFLATGKNKDLVKQAIPTETENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=899757 R6Y88_RS18975 WP_015384132.1 3722357..3722974(+) (comEA) [Bacillus subtilis strain YT-4]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTGTTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGACCTGGTGAAGCAAGCTATACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTTTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCCTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.561

100

0.976
  comEA Staphylococcus aureus N315

33.784

100

0.366