Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R6Y88_RS15895 Genome accession   NZ_CP137687
Coordinates   3150002..3150646 (+) Length   214 a.a.
NCBI ID   WP_375060239.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3145002..3155646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS15865 - 3145417..3145785 (-) 369 WP_015483634.1 hypothetical protein -
  R6Y88_RS15870 - 3145963..3146025 (-) 63 Protein_3081 hypothetical protein -
  R6Y88_RS15875 degQ 3146247..3146387 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  R6Y88_RS15880 - 3146572..3147432 (+) 861 WP_015483633.1 polyprenyl synthetase family protein -
  R6Y88_RS15885 comX 3147445..3147609 (+) 165 WP_015384519.1 competence pheromone ComX -
  R6Y88_RS15890 comP 3147621..3149921 (+) 2301 WP_046340263.1 histidine kinase Regulator
  R6Y88_RS15895 comA 3150002..3150646 (+) 645 WP_375060239.1 two-component system response regulator ComA Regulator
  R6Y88_RS15900 yuxO 3150664..3151044 (+) 381 WP_015483631.1 hotdog fold thioesterase -
  R6Y88_RS15905 mnhG 3151083..3151457 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  R6Y88_RS15910 mrpF 3151441..3151725 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  R6Y88_RS15915 mrpE 3151725..3152201 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  R6Y88_RS15920 mrpD 3152207..3153688 (-) 1482 WP_015384516.1 Na+/H+ antiporter subunit D -
  R6Y88_RS15925 mrpC 3153681..3154022 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  R6Y88_RS15930 mrpB 3154022..3154453 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24186.54 Da        Isoelectric Point: 4.6168

>NTDB_id=899747 R6Y88_RS15895 WP_375060239.1 3150002..3150646(+) (comA) [Bacillus subtilis strain YT-4]
MKKILVIDDHPAVMEDTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=899747 R6Y88_RS15895 WP_375060239.1 3150002..3150646(+) (comA) [Bacillus subtilis strain YT-4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGACACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995