Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R6Y88_RS08785 Genome accession   NZ_CP137687
Coordinates   1727773..1728723 (-) Length   316 a.a.
NCBI ID   WP_015382768.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722773..1733723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS08765 cdaE 1723641..1725059 (+) 1419 WP_015382772.1 MDR family MFS transporter -
  R6Y88_RS08770 yclQ 1725106..1726059 (-) 954 WP_015482797.1 petrobactin ABC transporter substrate-binding protein YclQ -
  R6Y88_RS08775 yclP 1726081..1726839 (-) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  R6Y88_RS08780 yclO 1726833..1727780 (-) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -
  R6Y88_RS08785 ceuB 1727773..1728723 (-) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  R6Y88_RS08790 thrD 1729108..1730472 (+) 1365 WP_015382767.1 aspartate kinase -
  R6Y88_RS08795 yczN 1730625..1730738 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  R6Y88_RS08800 yczM 1730820..1730909 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  R6Y88_RS08805 phrC 1731009..1731131 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  R6Y88_RS08810 rapC 1731115..1732263 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=899719 R6Y88_RS08785 WP_015382768.1 1727773..1728723(-) (ceuB) [Bacillus subtilis strain YT-4]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLIAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=899719 R6Y88_RS08785 WP_015382768.1 1727773..1728723(-) (ceuB) [Bacillus subtilis strain YT-4]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTTTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAACAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCC
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GATTGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTAGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCCCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528