Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   R6Y88_RS04820 Genome accession   NZ_CP137687
Coordinates   975935..976888 (-) Length   317 a.a.
NCBI ID   WP_014476425.1    Uniprot ID   A0A0K6M9I2
Organism   Bacillus subtilis strain YT-4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 970935..981888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS04790 appD 971056..972042 (-) 987 WP_015383344.1 oligopeptide ABC transporter ATP-binding protein AppD -
  R6Y88_RS04795 yjaZ 972235..973020 (-) 786 WP_015383343.1 DUF2268 domain-containing protein -
  R6Y88_RS04800 fabF 973096..974337 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  R6Y88_RS04805 fabH 974360..975298 (-) 939 WP_015483083.1 beta-ketoacyl-ACP synthase III -
  R6Y88_RS04810 yjzB 975463..975699 (+) 237 WP_015383342.1 spore coat protein YjzB -
  R6Y88_RS04815 comZ 975729..975920 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  R6Y88_RS04820 med 975935..976888 (-) 954 WP_014476425.1 transcriptional regulator Med Regulator
  R6Y88_RS04825 - 976978..977535 (-) 558 WP_015383340.1 hypothetical protein -
  R6Y88_RS04830 - 977617..978351 (-) 735 WP_015483082.1 hypothetical protein -
  R6Y88_RS04835 yjzD 978602..978787 (+) 186 WP_003245236.1 YjzD family protein -
  R6Y88_RS04840 yjzC 978833..979012 (-) 180 WP_003245356.1 YjzC family protein -
  R6Y88_RS04845 argF 979098..980057 (-) 960 WP_015383338.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.84 Da        Isoelectric Point: 4.6031

>NTDB_id=899709 R6Y88_RS04820 WP_014476425.1 975935..976888(-) (med) [Bacillus subtilis strain YT-4]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=899709 R6Y88_RS04820 WP_014476425.1 975935..976888(-) (med) [Bacillus subtilis strain YT-4]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.685

100

0.997