Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   R6Y88_RS04815 Genome accession   NZ_CP137687
Coordinates   975729..975920 (-) Length   63 a.a.
NCBI ID   WP_003224559.1    Uniprot ID   G4NWD2
Organism   Bacillus subtilis strain YT-4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 970729..980920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS04790 appD 971056..972042 (-) 987 WP_015383344.1 oligopeptide ABC transporter ATP-binding protein AppD -
  R6Y88_RS04795 yjaZ 972235..973020 (-) 786 WP_015383343.1 DUF2268 domain-containing protein -
  R6Y88_RS04800 fabF 973096..974337 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  R6Y88_RS04805 fabH 974360..975298 (-) 939 WP_015483083.1 beta-ketoacyl-ACP synthase III -
  R6Y88_RS04810 yjzB 975463..975699 (+) 237 WP_015383342.1 spore coat protein YjzB -
  R6Y88_RS04815 comZ 975729..975920 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  R6Y88_RS04820 med 975935..976888 (-) 954 WP_014476425.1 transcriptional regulator Med Regulator
  R6Y88_RS04825 - 976978..977535 (-) 558 WP_015383340.1 hypothetical protein -
  R6Y88_RS04830 - 977617..978351 (-) 735 WP_015483082.1 hypothetical protein -
  R6Y88_RS04835 yjzD 978602..978787 (+) 186 WP_003245236.1 YjzD family protein -
  R6Y88_RS04840 yjzC 978833..979012 (-) 180 WP_003245356.1 YjzC family protein -
  R6Y88_RS04845 argF 979098..980057 (-) 960 WP_015383338.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7214.27 Da        Isoelectric Point: 4.2564

>NTDB_id=899708 R6Y88_RS04815 WP_003224559.1 975729..975920(-) (comZ) [Bacillus subtilis strain YT-4]
MQHEKSLEFLQIAMKYLPEAKEQLEKSGIELSMEAIQPFMNLFTTVMAEAYELGKSDAKSETE

Nucleotide


Download         Length: 192 bp        

>NTDB_id=899708 R6Y88_RS04815 WP_003224559.1 975729..975920(-) (comZ) [Bacillus subtilis strain YT-4]
ATGCAGCACGAAAAATCACTTGAATTCTTGCAAATTGCCATGAAATATCTCCCTGAAGCGAAAGAACAGCTTGAGAAATC
AGGCATTGAGCTCTCAATGGAGGCCATACAGCCGTTTATGAATCTGTTTACAACGGTAATGGCGGAAGCTTATGAGCTTG
GCAAGTCTGACGCTAAATCTGAAACAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

100

100

1