Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LDO37_RS11940 Genome accession   NZ_AP025144
Coordinates   2693170..2694561 (-) Length   463 a.a.
NCBI ID   WP_126606785.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15640T     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2688170..2699561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO37_RS11905 moaE 2688811..2689266 (-) 456 WP_126606780.1 molybdopterin synthase catalytic subunit MoaE -
  LDO37_RS11910 moaD 2689270..2689515 (-) 246 WP_126606781.1 molybdopterin synthase sulfur carrier subunit -
  LDO37_RS11915 moaC 2689515..2689991 (-) 477 WP_126606782.1 cyclic pyranopterin monophosphate synthase MoaC -
  LDO37_RS11920 moaB 2690002..2690514 (-) 513 WP_101111493.1 molybdenum cofactor biosynthesis protein B -
  LDO37_RS11925 moaA 2690581..2691573 (-) 993 WP_126606783.1 GTP 3',8-cyclase MoaA -
  LDO37_RS11930 yvcK 2691916..2692803 (+) 888 WP_126606784.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  LDO37_RS11935 - 2692792..2693139 (-) 348 WP_101111490.1 Hpt domain-containing protein -
  LDO37_RS11940 luxO 2693170..2694561 (-) 1392 WP_126606785.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LDO37_RS11945 uvrB 2694832..2696862 (-) 2031 WP_126606786.1 excinuclease ABC subunit UvrB -
  LDO37_RS11950 - 2697531..2697794 (-) 264 WP_185829735.1 phage protease -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51114.35 Da        Isoelectric Point: 5.5249

>NTDB_id=89953 LDO37_RS11940 WP_126606785.1 2693170..2694561(-) (luxO) [Vibrio penaeicida strain IFO 15640T]
MQDTTTNPNPKYLLMVEDTASVAALYRSYLNPLGLDITIVGTGIDAIKSLEKRTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVPVNNALRKAGKLRSPTSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASLFITGESGTGKEVCAEAIHAASKRGDSPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRNR
GEDVVEIAYSLLGHMSHEEGKGFVRFSQQVLDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSELK
QANATDSISTKLSIEEIRPLWLTEKSAIEQAIEACEGNIPKAAGHLDVSPSTLYRKLQTWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=89953 LDO37_RS11940 WP_126606785.1 2693170..2694561(-) (luxO) [Vibrio penaeicida strain IFO 15640T]
ATGCAAGACACAACAACTAATCCGAATCCAAAATATCTTCTCATGGTAGAAGATACCGCTTCGGTTGCAGCGTTATACCG
ATCCTATCTTAATCCACTTGGCTTGGATATTACTATTGTCGGGACGGGAATAGATGCAATAAAAAGTCTCGAAAAGCGAA
CTCCTGATCTCATTTTACTCGACTTACGCCTACCTGATATGACCGGGATGGATGTCCTTTCGTCAGTAAAGTCCAATTAC
CCTGATGTTCCTGTCATCTTTATGACTGCGCATGGTTCAATAGATACCGCAGTTGAAGCGATGAGAAAGGGGGCTCAGGA
TTTCCTTATTAAGCCATGTGAAGCAGATAGGCTTCGTGTCCCGGTTAATAATGCTCTTCGAAAAGCTGGAAAGTTGCGTT
CTCCAACCAGTGAACCTGATAACAACTATCAAGGCTTTATTGGCAGTAGCCAGACCATGCAGGCGGTTTATCGAACGATA
GATTCCGCAGCTCCTAGTAAAGCTTCACTTTTCATCACTGGGGAAAGTGGTACGGGTAAAGAGGTGTGTGCTGAAGCCAT
ACACGCTGCGAGTAAACGTGGTGATAGTCCTTTTATCGCGATCAACTGTGCTGCCATCCCTAAAGATCTTATAGAAAGTG
AGCTTTTTGGTCATGTTAAAGGTGCCTTTACAGGTGCATCAACGGATAGGCAAGGTGCAGCAGAGTTAGCTGATGGTGGA
ACTCTATTCTTGGATGAATTGTGTGAGATGGACTTGGATCTTCAAACCAAGCTGCTTCGATTTATCCAAACGGGTACTTT
TCAAAAAGTGGGTTCTTCCAAAATGAAAAGTGTGGATGTGCGTTTTGTATGTGCAACCAACCGTGACCCATGGAAAGAAG
TGCAAGAAGGGCGTTTTCGTGAGGATTTGTATTACCGACTTTATGTCATTCCGTTGCATTTACCACCGTTGAGAAACCGT
GGGGAAGATGTAGTCGAAATTGCGTATTCATTACTTGGGCATATGTCTCATGAAGAAGGGAAAGGTTTTGTACGTTTTTC
CCAGCAAGTACTCGATAAATTTATTGAGTACGAATGGCCTGGTAACGTTCGTCAGTTGCAGAACGTGCTGCGTAATGCCG
TGGTACTTAACCATGGGAGTGAGATCACACTTAATATGCTACCGCCACCCTTAAATTTGCCTTCGGTATCAGAATTGAAA
CAAGCGAATGCAACCGACTCAATTTCAACTAAACTCTCTATAGAAGAAATACGACCACTTTGGCTTACTGAAAAAAGTGC
GATAGAGCAAGCAATTGAAGCCTGTGAAGGTAATATTCCGAAGGCAGCAGGTCATCTAGACGTCAGTCCGTCTACGTTGT
ATCGCAAGCTGCAAACTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-120)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

81.514

96.976

0.79
  pilR Pseudomonas aeruginosa PAK

39.686

96.328

0.382

Multiple sequence alignment