Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   R6U75_RS04630 Genome accession   NZ_CP137627
Coordinates   889313..890575 (+) Length   420 a.a.
NCBI ID   WP_199875536.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain LA0061     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 884313..895575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U75_RS04605 (R6U75_04600) tsf 885169..886047 (+) 879 WP_199875539.1 translation elongation factor Ts -
  R6U75_RS04610 (R6U75_04605) pyrH 886201..886926 (+) 726 WP_002833607.1 UMP kinase -
  R6U75_RS04615 (R6U75_04610) frr 886926..887486 (+) 561 WP_199875538.1 ribosome recycling factor -
  R6U75_RS04620 (R6U75_04615) - 887744..888493 (+) 750 WP_094104512.1 isoprenyl transferase -
  R6U75_RS04625 (R6U75_04620) - 888504..889289 (+) 786 WP_199875537.1 phosphatidate cytidylyltransferase -
  R6U75_RS04630 (R6U75_04625) eeP 889313..890575 (+) 1263 WP_199875536.1 RIP metalloprotease RseP Regulator
  R6U75_RS04635 (R6U75_04630) - 890603..892318 (+) 1716 WP_199875535.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46286.93 Da        Isoelectric Point: 9.8039

>NTDB_id=899500 R6U75_RS04630 WP_199875536.1 889313..890575(+) (eeP) [Pediococcus pentosaceus strain LA0061]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEGELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQTKKITLTPKLASNGSKKVGMIGVQPSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=899500 R6U75_RS04630 WP_199875536.1 889313..890575(+) (eeP) [Pediococcus pentosaceus strain LA0061]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGGCTCGATGAACAAGAAGGTGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTCAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAACTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAACAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAACCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCTACCCATCAAGGTTTCATGTCAGT
GCTGTATGTGCTTGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.486
  eeP Streptococcus thermophilus LMD-9

48.113

100

0.486