Detailed information NTG0089941

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LDO37_RS03670
• Genome accession: NZ_AP025144
• Coordinates: 758066..761455 (-)
• Length: 1129 a.a.
• NCBI ID: WP_126609001.1
• Uniprot ID: A0AAV5NLQ3
• Organism: Vibrio penaeicida strain IFO 15640T
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 753066..766455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO37_RS03655	-	753319..754344 (-)	1026	WP_126607043.1	ABC transporter permease	-
LDO37_RS03660	-	754347..755333 (-)	987	WP_101113265.1	ABC transporter permease	-
LDO37_RS03665	-	755491..757170 (-)	1680	WP_101113264.1	ABC transporter substrate-binding protein	-
LDO37_RS03670	chiS	758066..761455 (-)	3390	WP_126609001.1	ATP-binding protein	Regulator
LDO37_RS03675	rsmC	761698..762723 (-)	1026	WP_126609002.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LDO37_RS03680	-	762814..763899 (-)	1086	WP_101113261.1	AI-2E family transporter	-
LDO37_RS03685	hemL	764136..765428 (-)	1293	WP_126609003.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LDO37_RS03690	erpA	765629..765970 (+)	342	WP_126609004.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127236.72 Da
• Isoelectric Point: 5.4859

>NTDB_id=89941 LDO37_RS03670 WP_126609001.1 758066..761455(-) (chiS) [Vibrio penaeicida strain IFO 15640T]
MFKPNKKQKFKRLQHTLMVAFLVLSITPLTMIALFFLQSHSKDLQEQSTSHLLSVRDTKKQQLLDYFEAKESEVMGFVRS
ELAYNSGGRFYGLINAFNNLGETIEQARDYAQQRYIQGSGDQIKTSVLPESEDYQGSERYRLMHKRYHRRYVDLLKRSDF
DDILLVDMDGNVVYSLNKYDNYGTNLNTGKYSESNLGKTFNALKEKVRKHKDNQDFTPIAMSDFALEGNEHVAWFAAPIV
QHEYLHSYALFRLPSTKLLSLFEDAATSKTIKAFLVGEDKAARIFNVSQEEIDESAEIIELALNDQTSVKTFVNTSGENI
IAAFTNIQIQNIEWALVAERTEAEAFARIQQLEKVFVVAMFIAIILVVICSHYLSNFITSPLLKLTWSAERVSAGDLDEV
MFETKRKDEIGRLGVSFQRMQRSIREKILTIKSQNEELEAHLKVIQTQNDELQLANKLKDEFLATTSHELRTPLHGMVGI
AEALISGANGPIPANQKHQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIQASAVNLSSSTRLVLELSQHLLGNKSIRII
NQVPMDLPLVSADPQRIEQVLYNLIGNAIKYTSEGKIVISATVLDEKLRVQVVDTGQGIPAEQLEHIFEPLIQAGQDSSR
YRQGAGLGLSISRQLIELMGGTLYVSSQPLVGTTFSFSLPLASEEEISISKQLGTTQSHFQAPDSSDSAKLDENSLPENP
DGPLIVVADDEPVNLQILDSFLKMEGYRVKTAKDGTEALELVQQEKPELLLLDVMMPGLSGYQVCEQVRLSYDHSELPVI
MLTALSQTNDRIKGFDSGANDYLTKPFNKLELASRIKAHLAAGKAELRRIENDKLQAELKQRALVEANLLETQGRLLEQL
ESAPEAILCLRDDGRIRFANEAAAKLFKRTQEQLKRSNGDEVIAPKYLNLQEDHFCGGIDVYVDDRRDHISADVLKLPEG
SDIHYMYIFNVGGGLNAARINNLETAVEALSSYAFEGDKGKLQQLKELGGEFTRIADKVSGRGGDKQELMREILVDSMTT
AIDYWESETGQTKFSFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVINSIEFILEHCHTPSGQREKLITLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=89941 LDO37_RS03670 WP_126609001.1 758066..761455(-) (chiS) [Vibrio penaeicida strain IFO 15640T]
ATGTTTAAACCTAATAAAAAACAAAAATTTAAACGTCTTCAGCACACGTTGATGGTGGCTTTTCTCGTTTTGAGCATCAC
GCCACTGACTATGATCGCGCTGTTTTTTCTCCAGTCCCATAGTAAAGATTTACAAGAACAAAGTACGTCTCACCTCCTTT
CAGTTCGAGATACAAAAAAACAACAGTTACTCGATTATTTCGAAGCCAAAGAGTCTGAGGTGATGGGCTTTGTCCGTTCT
GAACTGGCGTACAATAGCGGAGGAAGGTTCTACGGTTTAATAAATGCTTTCAATAACTTGGGCGAGACCATTGAGCAAGC
CCGAGACTATGCACAACAGCGTTATATACAAGGTTCTGGCGATCAAATAAAAACGTCGGTGTTACCAGAGTCCGAAGACT
ATCAGGGTAGTGAGCGCTACCGATTAATGCACAAACGCTATCACCGCCGCTACGTTGATTTGCTGAAACGTAGCGATTTT
GACGATATTTTATTAGTAGATATGGATGGTAATGTCGTTTATTCCCTTAATAAATATGACAATTATGGTACTAATCTAAA
TACCGGAAAATACAGTGAAAGCAATCTAGGCAAAACTTTTAACGCGTTAAAAGAAAAAGTTAGAAAGCACAAAGACAACC
AAGATTTCACGCCTATCGCTATGTCGGACTTTGCTTTAGAAGGCAACGAACATGTTGCGTGGTTTGCCGCCCCCATTGTG
CAACATGAATACTTACACAGTTACGCGCTATTTCGTTTGCCGAGCACCAAACTTTTGTCGCTGTTTGAAGATGCTGCAAC
GAGTAAAACCATCAAAGCTTTCTTAGTTGGTGAAGATAAAGCAGCTCGTATTTTTAACGTATCTCAAGAAGAAATTGACG
AAAGTGCCGAGATTATCGAGCTTGCATTAAACGATCAAACATCAGTAAAAACCTTTGTAAACACCTCTGGCGAAAACATT
ATTGCCGCATTTACGAATATTCAAATCCAAAACATTGAATGGGCATTAGTTGCTGAGCGTACAGAAGCAGAAGCTTTTGC
GCGAATACAACAGCTTGAAAAAGTGTTTGTGGTCGCCATGTTTATCGCCATTATCTTGGTGGTGATTTGTTCACATTATT
TGTCTAATTTTATTACCTCCCCTCTTCTCAAGCTAACTTGGTCTGCAGAACGAGTGTCGGCAGGTGATCTTGATGAAGTG
ATGTTTGAAACCAAACGTAAAGATGAAATCGGCAGGTTAGGTGTCAGCTTCCAGCGGATGCAGCGCTCAATACGCGAGAA
AATTCTAACGATCAAATCTCAGAATGAAGAGCTTGAAGCGCACTTGAAGGTGATTCAGACCCAAAATGATGAATTGCAAC
TCGCCAACAAGTTAAAAGATGAATTTCTGGCAACAACTTCGCATGAATTGAGAACACCACTACACGGAATGGTCGGTATT
GCCGAGGCTCTCATCAGTGGCGCAAACGGTCCTATCCCAGCCAATCAGAAACACCAACTCGACATCATCATTAACAGCGG
TCAGCGGCTGGCGACTTTGGTTGATGACTTGCTCGATTACCATAAGATGCGCTATGGCAGCCTAGATATTCAAGCCTCCG
CGGTAAACTTATCCTCGTCGACTCGACTTGTTTTGGAATTATCTCAGCATTTGTTGGGGAACAAATCCATTCGCATCATT
AATCAAGTCCCAATGGATCTTCCTTTGGTTTCCGCAGATCCTCAGCGCATTGAGCAAGTACTTTACAACCTAATCGGTAA
TGCTATTAAGTACACGTCGGAAGGTAAAATCGTTATTTCCGCGACCGTACTCGACGAGAAACTTAGAGTACAAGTTGTCG
ATACCGGTCAAGGTATACCGGCAGAACAGCTTGAACATATATTCGAACCCTTGATTCAAGCAGGACAAGACTCTAGTCGC
TATCGACAAGGCGCAGGGCTAGGACTATCGATTAGCCGCCAGTTAATTGAACTGATGGGTGGAACGCTGTATGTCAGTAG
CCAACCTTTAGTAGGCACCACATTCAGTTTCTCGCTACCTTTAGCCTCTGAAGAAGAGATTTCGATATCCAAACAACTGG
GGACAACACAAAGCCACTTTCAGGCACCCGATAGTTCGGACAGTGCCAAACTGGATGAAAACTCACTACCTGAAAACCCA
GACGGTCCACTGATTGTCGTTGCTGATGATGAACCAGTGAACCTACAGATTCTGGACAGCTTCCTAAAAATGGAAGGCTA
TAGAGTTAAAACAGCAAAAGATGGGACTGAAGCATTAGAATTGGTTCAGCAAGAGAAGCCTGAGCTGCTCCTTTTAGACG
TTATGATGCCAGGCTTAAGCGGGTATCAAGTATGTGAGCAAGTCAGGTTGAGTTATGACCACTCAGAGTTACCTGTCATC
ATGCTTACCGCTTTAAGTCAAACTAACGACAGAATCAAAGGCTTTGATAGCGGTGCCAATGACTATCTCACTAAGCCATT
CAACAAATTAGAACTAGCATCGCGTATTAAAGCTCACCTTGCTGCAGGTAAAGCAGAGCTAAGGCGAATTGAAAATGACA
AACTTCAGGCTGAATTAAAGCAGCGTGCACTTGTAGAGGCAAACTTGCTTGAAACACAAGGTAGGCTGCTTGAGCAATTA
GAATCAGCTCCCGAAGCTATTCTCTGTCTGCGGGATGATGGTCGAATCCGTTTCGCAAATGAAGCAGCAGCAAAACTGTT
TAAACGGACACAAGAGCAACTTAAACGCTCTAATGGCGATGAAGTTATCGCACCTAAATACCTCAATCTTCAGGAAGACC
ACTTCTGCGGCGGTATTGATGTATATGTCGATGATCGACGCGACCACATTTCTGCGGATGTCCTTAAGCTCCCAGAAGGC
TCTGATATCCACTATATGTATATCTTCAATGTTGGTGGCGGCTTGAACGCAGCCAGAATTAACAACCTAGAAACCGCCGT
AGAGGCACTATCAAGCTACGCATTTGAAGGGGATAAAGGTAAGCTCCAACAGCTCAAAGAATTAGGCGGTGAATTTACAC
GTATCGCCGACAAAGTATCTGGGCGCGGTGGTGATAAACAGGAGCTAATGAGAGAAATCCTCGTCGATTCAATGACGACA
GCCATCGATTACTGGGAGTCTGAAACGGGTCAGACTAAGTTCTCTTTTGCGGAACAAAGCGGGCTGTGGCGTGTATACCT
AGACAGAAGTACACTTCAAACCCGAACTCTTGATAAGTATTTAAGGGTAGAAACACTACCAAAAACGCCTAGGTGGCGAA
CCGTCATTAACTCTATTGAGTTCATACTAGAGCATTGCCATACACCTAGTGGTCAACGTGAAAAGTTGATTACGCTAAGA
GACAAGCTGCAAAAACTTTTGACTTCGTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

• HAMP domain (HAMP) (374-426)

• Response regulator receiver domain (Response_reg) (725-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.15	100	0.712