Detailed information NTG0899245

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: R5H38_RS07300
• Genome accession: NZ_CP137602
• Coordinates: 1425852..1426895 (-)
• Length: 347 a.a.
• NCBI ID: WP_171989134.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 221006
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1420852..1431895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5H38_RS07270	yghU	1421994..1422782 (-)	789	WP_318150471.1	glutathione-dependent disulfide-bond oxidoreductase	-
R5H38_RS07275	-	1422791..1423081 (-)	291	WP_217374083.1	hypothetical protein	-
R5H38_RS07280	rplA	1423187..1423876 (-)	690	WP_217374084.1	50S ribosomal protein L1	-
R5H38_RS07285	rplK	1423917..1424342 (-)	426	WP_024382554.1	50S ribosomal protein L11	-
R5H38_RS07290	-	1424497..1424865 (+)	369	WP_239604110.1	DUF3397 domain-containing protein	-
R5H38_RS07295	amiF	1424920..1425855 (-)	936	WP_274504176.1	ABC transporter ATP-binding protein	Regulator
R5H38_RS07300	oppD	1425852..1426895 (-)	1044	WP_171989134.1	ABC transporter ATP-binding protein	Regulator
R5H38_RS07305	-	1426910..1427941 (-)	1032	WP_217374086.1	ABC transporter permease	-
R5H38_RS07310	-	1427952..1428866 (-)	915	WP_217374087.1	ABC transporter permease	-
R5H38_RS07315	-	1428937..1430583 (-)	1647	WP_277837646.1	peptide ABC transporter substrate-binding protein	-
R5H38_RS07320	-	1431009..1431395 (-)	387	WP_217374089.1	VOC family protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 38377.95 Da
• Isoelectric Point: 5.0184

>NTDB_id=899245 R5H38_RS07300 WP_171989134.1 1425852..1426895(-) (oppD) [Streptococcus parasuis strain 221006]
MNKETILQVENLNVTFHTYAGEVKAIRDVSFTLNKGETLAIVGESGSGKSVTTRTLMGLNAKNAHLSGKIHFKDKDLSEL
SESEWVKVRGNEIAMIFQDPMTSLDPTMTIGMQIAEPIMLHEKVSKSEALKRALELMKKVGIPNAEEHIKDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILNLMKEIQSQTQSSIIFITHDLGVVAGMADRVAVMYAGKIVEVGTV
EEVFYNPQHPYTWGLLNSMPTTETASGSLESIPGTPPDLLNPPVGDAFAARNAYALDIDFEEQPPMFQISDSHYAATWLL
DERAPEITPPLAILKRWEKWNSKKEKQ

Nucleotide

• Length: 1044 bp

>NTDB_id=899245 R5H38_RS07300 WP_171989134.1 1425852..1426895(-) (oppD) [Streptococcus parasuis strain 221006]
ATGAATAAAGAAACGATTTTACAAGTTGAAAATTTAAATGTTACCTTTCATACCTATGCAGGTGAAGTCAAAGCGATTCG
TGATGTCAGTTTTACTTTGAATAAAGGAGAGACTCTGGCTATTGTAGGAGAGTCAGGTTCAGGGAAATCAGTAACAACAC
GTACGCTAATGGGCTTGAATGCAAAAAATGCACATTTGTCAGGTAAGATTCATTTTAAAGATAAAGACTTGAGTGAGTTG
TCAGAGAGTGAGTGGGTAAAAGTTCGTGGAAATGAAATTGCCATGATTTTCCAAGATCCAATGACAAGTTTGGATCCAAC
AATGACCATTGGAATGCAAATTGCTGAGCCAATTATGTTGCACGAAAAAGTATCGAAATCTGAGGCTTTGAAACGTGCTT
TGGAGCTCATGAAGAAGGTTGGTATTCCAAATGCTGAAGAGCACATTAAAGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAACGTGCAGTCATTGCGATTGCACTTGCAGCGAATCCAGAAATTCTAATTGCGGATGAACCAACAACTGCCTTAGA
CGTGACGATTCAAGCGCAAATTTTAAATTTGATGAAAGAAATACAGTCTCAAACACAGTCTTCTATTATCTTTATTACCC
ATGATTTGGGTGTGGTAGCTGGTATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAGATAGTGGAAGTTGGAACGGTT
GAGGAAGTATTTTATAATCCGCAACATCCTTACACATGGGGATTATTAAACTCTATGCCGACAACAGAGACTGCTTCTGG
AAGTTTGGAATCCATTCCTGGAACTCCCCCAGATTTGTTGAATCCTCCTGTTGGAGATGCTTTTGCAGCCAGAAATGCAT
ATGCTCTCGATATTGATTTTGAAGAGCAACCGCCAATGTTCCAAATTTCAGATAGCCATTATGCAGCAACATGGTTGTTA
GATGAGCGAGCTCCTGAAATTACACCACCGTTAGCAATCTTGAAACGTTGGGAAAAATGGAATAGTAAGAAGGAGAAACA
ATGA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (27-183)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-296)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	81.579	98.559	0.804
amiE	Streptococcus salivarius strain HSISS4	56.765	97.983	0.556
amiE	Streptococcus thermophilus LMG 18311	56.471	97.983	0.553
amiE	Streptococcus thermophilus LMD-9	56.471	97.983	0.553