Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   R5H38_RS07295 Genome accession   NZ_CP137602
Coordinates   1424920..1425855 (-) Length   311 a.a.
NCBI ID   WP_274504176.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419920..1430855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS07265 - 1420367..1421937 (+) 1571 WP_318150470.1 IS3 family transposase -
  R5H38_RS07270 yghU 1421994..1422782 (-) 789 WP_318150471.1 glutathione-dependent disulfide-bond oxidoreductase -
  R5H38_RS07275 - 1422791..1423081 (-) 291 WP_217374083.1 hypothetical protein -
  R5H38_RS07280 rplA 1423187..1423876 (-) 690 WP_217374084.1 50S ribosomal protein L1 -
  R5H38_RS07285 rplK 1423917..1424342 (-) 426 WP_024382554.1 50S ribosomal protein L11 -
  R5H38_RS07290 - 1424497..1424865 (+) 369 WP_239604110.1 DUF3397 domain-containing protein -
  R5H38_RS07295 amiF 1424920..1425855 (-) 936 WP_274504176.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07300 oppD 1425852..1426895 (-) 1044 WP_171989134.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS07305 - 1426910..1427941 (-) 1032 WP_217374086.1 ABC transporter permease -
  R5H38_RS07310 - 1427952..1428866 (-) 915 WP_217374087.1 ABC transporter permease -
  R5H38_RS07315 - 1428937..1430583 (-) 1647 WP_277837646.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34983.74 Da        Isoelectric Point: 6.0122

>NTDB_id=899244 R5H38_RS07295 WP_274504176.1 1424920..1425855(-) (amiF) [Streptococcus parasuis strain 221006]
MSESRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKGRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=899244 R5H38_RS07295 WP_274504176.1 1424920..1425855(-) (amiF) [Streptococcus parasuis strain 221006]
ATGAGCGAAAGTAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CAGTTGGCCGTACCATTCTAAAGTTGTATGACTATAATGCTGGCGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGCTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACACGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTTTC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCAATTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGG
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

52.922

99.035

0.524
  amiF Streptococcus thermophilus LMG 18311

52.597

99.035

0.521
  amiF Streptococcus salivarius strain HSISS4

52.273

99.035

0.518