Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   R5H38_RS02400 Genome accession   NZ_CP137602
Coordinates   462918..463607 (+) Length   229 a.a.
NCBI ID   WP_217374725.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 457918..468607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS02375 - 458248..459591 (+) 1344 WP_216807102.1 DEAD/DEAH box helicase -
  R5H38_RS02380 - 459610..459834 (+) 225 WP_130554666.1 DUF4059 family protein -
  R5H38_RS02385 trxB 459847..460764 (+) 918 WP_318150800.1 thioredoxin-disulfide reductase -
  R5H38_RS02390 - 460774..461313 (+) 540 WP_174845818.1 YceD family protein -
  R5H38_RS02395 gndA 461409..462836 (+) 1428 WP_318150801.1 NADP-dependent phosphogluconate dehydrogenase -
  R5H38_RS02400 covR 462918..463607 (+) 690 WP_217374725.1 DNA-binding response regulator Regulator
  R5H38_RS02405 - 463687..464817 (+) 1131 WP_318150802.1 AI-2E family transporter -
  R5H38_RS02410 - 465019..466266 (+) 1248 WP_239604569.1 aminoacyltransferase -
  R5H38_RS02415 - 466244..467491 (+) 1248 WP_239604570.1 aminoacyltransferase -
  R5H38_RS02420 nrdR 467565..468056 (+) 492 WP_130554659.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26229.20 Da        Isoelectric Point: 6.0391

>NTDB_id=899223 R5H38_RS02400 WP_217374725.1 462918..463607(+) (covR) [Streptococcus parasuis strain 221006]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKKLAKELLAIKPATVMIVV
VEPTEVADHGEDILTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGVGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=899223 R5H38_RS02400 WP_217374725.1 462918..463607(+) (covR) [Streptococcus parasuis strain 221006]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGAAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGACCATGGGGAAGATATATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACGAATTGTAAACAGGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAACTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACAAATGTTGTGGATGTCTATATTCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTGTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.66

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432