Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R5H38_RS00940 | Genome accession | NZ_CP137602 |
| Coordinates | 170611..173064 (+) | Length | 817 a.a. |
| NCBI ID | WP_318150718.1 | Uniprot ID | - |
| Organism | Streptococcus parasuis strain 221006 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 165611..178064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5H38_RS00905 | nusG | 165745..166284 (+) | 540 | WP_277837301.1 | transcription termination/antitermination protein NusG | - |
| R5H38_RS00910 | - | 166522..166713 (-) | 192 | WP_217374555.1 | helix-turn-helix transcriptional regulator | - |
| R5H38_RS00920 | rpsB | 167521..168297 (+) | 777 | WP_277837367.1 | 30S ribosomal protein S2 | - |
| R5H38_RS00925 | tsf | 168453..169493 (+) | 1041 | WP_277844300.1 | translation elongation factor Ts | - |
| R5H38_RS00930 | - | 169655..169993 (-) | 339 | WP_130554180.1 | thioredoxin domain-containing protein | - |
| R5H38_RS00935 | - | 170147..170605 (+) | 459 | WP_217375130.1 | CtsR family transcriptional regulator | - |
| R5H38_RS00940 | clpC | 170611..173064 (+) | 2454 | WP_318150718.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| R5H38_RS00945 | - | 173193..174230 (+) | 1038 | WP_318150719.1 | AAA family ATPase | - |
| R5H38_RS00950 | pnuC | 174240..175055 (+) | 816 | WP_412080663.1 | nicotinamide riboside transporter PnuC | - |
| R5H38_RS00955 | - | 175048..175830 (+) | 783 | WP_172055076.1 | NUDIX domain-containing protein | - |
| R5H38_RS00960 | dusB | 175864..176868 (-) | 1005 | WP_172036533.1 | tRNA dihydrouridine synthase DusB | - |
| R5H38_RS00965 | hslO | 176861..177727 (-) | 867 | WP_217374561.1 | Hsp33 family molecular chaperone HslO | - |
Sequence
Protein
Download Length: 817 a.a. Molecular weight: 90751.27 Da Isoelectric Point: 5.9014
>NTDB_id=899217 R5H38_RS00940 WP_318150718.1 170611..173064(+) (clpC) [Streptococcus parasuis strain 221006]
MKISTGLQRVYEDAQLIAQRYACDHLETWHILLAFVINHDTVAGAVLAEYPMSISDFEHATFVVTEKVYREELDKFNILP
SSKRLDDTAQFARKIAEVVKAKELGSEHLFQAMLLDKRSTASQILDKVGFHFEEIEDEFRFVDLRKNLEYRAGFTKEDLK
AIRSVMKGGKAKTASVGQMMGMPPTAQSGGLEDYTRDLTALAREGKIEPVIGRDAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAEGDVPVRLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDATV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQVEETGLSTIDKALMAGKYKTVSKLLIKTTEKNLLSQNDDLEV
TEDDILETLSRLSGIPVAKLSQSDTKKYLNLEKELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGAADLSKDHKEVEKRIFEELKKTYRPEFINRIDEKVVF
HSLTESDMLDVVKVMVKPLIVVAASKGILLKFQPSALKLLAKEGYDPEMGARPLRRLLQTKLEDPMAEMLLREDLGAGMV
LKVGVKGNQLKFESVNE
MKISTGLQRVYEDAQLIAQRYACDHLETWHILLAFVINHDTVAGAVLAEYPMSISDFEHATFVVTEKVYREELDKFNILP
SSKRLDDTAQFARKIAEVVKAKELGSEHLFQAMLLDKRSTASQILDKVGFHFEEIEDEFRFVDLRKNLEYRAGFTKEDLK
AIRSVMKGGKAKTASVGQMMGMPPTAQSGGLEDYTRDLTALAREGKIEPVIGRDAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAEGDVPVRLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDATV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQVEETGLSTIDKALMAGKYKTVSKLLIKTTEKNLLSQNDDLEV
TEDDILETLSRLSGIPVAKLSQSDTKKYLNLEKELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGAADLSKDHKEVEKRIFEELKKTYRPEFINRIDEKVVF
HSLTESDMLDVVKVMVKPLIVVAASKGILLKFQPSALKLLAKEGYDPEMGARPLRRLLQTKLEDPMAEMLLREDLGAGMV
LKVGVKGNQLKFESVNE
Nucleotide
Download Length: 2454 bp
>NTDB_id=899217 R5H38_RS00940 WP_318150718.1 170611..173064(+) (clpC) [Streptococcus parasuis strain 221006]
ATGAAAATTTCAACAGGCTTACAACGGGTTTATGAAGATGCTCAGTTGATTGCCCAACGATATGCATGCGATCATTTAGA
AACGTGGCATATTTTGCTAGCATTTGTCATAAATCACGATACGGTAGCTGGTGCTGTTTTGGCAGAATACCCAATGAGTA
TTTCAGATTTCGAACATGCTACTTTTGTTGTTACAGAAAAAGTATACCGTGAAGAATTGGATAAATTTAATATTCTACCC
TCCTCAAAGAGATTAGACGATACAGCTCAGTTCGCTAGAAAGATTGCAGAAGTCGTTAAGGCAAAAGAATTAGGAAGCGA
GCATTTGTTTCAGGCAATGCTGTTAGACAAACGTTCAACCGCAAGTCAAATTCTAGATAAAGTAGGTTTTCATTTTGAAG
AGATAGAAGATGAATTCCGTTTTGTTGATTTACGTAAAAACTTAGAGTATCGTGCAGGGTTCACCAAAGAGGATTTGAAA
GCTATCCGTAGCGTGATGAAAGGTGGAAAGGCTAAAACAGCAAGTGTAGGTCAAATGATGGGCATGCCACCAACTGCTCA
AAGTGGTGGATTGGAGGATTATACACGAGATTTGACAGCTTTAGCTCGCGAGGGGAAAATTGAACCTGTTATTGGTCGCG
ATGCTGAAATTTCACGGATGATTCAAATTCTATCACGTAAAACGAAGAACAATCCTGTTTTGGTTGGCGATGCAGGTGTT
GGGAAAACAGCACTAGCATTAGGTCTTGCTCAGCGTGTTGCAGAAGGAGATGTTCCTGTCAGATTAGCAAAGATGCGTGT
TTTGGAACTTGATTTGATGAATGTTATTGCAGGAACTCGTTTCCGTGGTGACTTTGAAGAGCGGATGAATAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTTATCCTCTTTATCGATGAATTACATACTATTATGGGGTCGGGTTCGGGAATTGAT
TCAACCTTAGATGCTGCCAATATTCTCAAACCGGCCTTGGCTCGAGGGACCCTACGCACTGTTGGTGCAACGACACAGGA
TGAATACCAAAAGCATATTGAAAAAGATGCTGCCCTGGTCCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTTG
AGGACAGTATTGCCATTTTGACCGGGCTTAAAGGGACTTTTGAAAAATACCATAGGGTCCGTATTGGAGATGCGACTGTT
GAGACAGCTGTGACTTACGCCAAGAGGTATCTGACTAGTAAAAACTTGCCAGACTCAGCAATTGACTTGTTAGATGAAGC
CAGTGCAACGGTACAAAATAGAGTGAAAGGGCAGGTTGAAGAAACAGGTCTTTCAACTATTGATAAAGCTTTGATGGCTG
GAAAATACAAGACTGTCAGTAAGCTCTTAATCAAGACTACAGAAAAGAATCTGTTGAGTCAAAACGATGACTTAGAAGTG
ACAGAAGATGACATTTTGGAAACACTTAGTCGCTTATCAGGTATCCCAGTAGCCAAGCTCAGCCAATCAGATACTAAGAA
GTACCTGAATCTGGAAAAAGAATTGCACAAACGTGTGATTGGGCAGGAAGAAGCTATTTCTGCCGTTAGTAGAGCTATCC
GCCGTAATCAGTCGGGGATTCGGACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTAGGACCAACTGGTGTCGGTAAG
ACTGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTATGTTGGCTATGAAGAAGGTGGCGAATTAACAGAAA
AAGTTCGTAATAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGACGGTGTCTTGACCGATAGTAAAGGTCGCAAGGTTGATTTCTCCAATACAGTCATTATCATGACATC
AAACTTGGGGGCAACAGCTCTTCGCGATGACAAGACCGTTGGGTTTGGTGCGGCTGATCTGTCCAAAGACCACAAGGAAG
TGGAGAAACGCATTTTTGAAGAATTGAAAAAGACCTATCGTCCTGAATTTATCAACCGTATCGATGAAAAGGTAGTCTTC
CACAGCTTGACAGAATCCGATATGTTGGATGTTGTCAAAGTGATGGTGAAGCCATTGATTGTGGTTGCCGCGAGCAAGGG
AATCCTCCTGAAATTCCAACCATCAGCCCTCAAATTGTTGGCCAAAGAAGGCTACGATCCAGAAATGGGTGCTCGCCCTC
TTCGTCGGTTGCTCCAAACAAAATTGGAAGACCCGATGGCAGAAATGCTTTTGCGTGAAGATCTTGGAGCAGGTATGGTT
CTGAAAGTGGGTGTCAAAGGTAACCAACTCAAATTTGAGAGTGTGAATGAATAG
ATGAAAATTTCAACAGGCTTACAACGGGTTTATGAAGATGCTCAGTTGATTGCCCAACGATATGCATGCGATCATTTAGA
AACGTGGCATATTTTGCTAGCATTTGTCATAAATCACGATACGGTAGCTGGTGCTGTTTTGGCAGAATACCCAATGAGTA
TTTCAGATTTCGAACATGCTACTTTTGTTGTTACAGAAAAAGTATACCGTGAAGAATTGGATAAATTTAATATTCTACCC
TCCTCAAAGAGATTAGACGATACAGCTCAGTTCGCTAGAAAGATTGCAGAAGTCGTTAAGGCAAAAGAATTAGGAAGCGA
GCATTTGTTTCAGGCAATGCTGTTAGACAAACGTTCAACCGCAAGTCAAATTCTAGATAAAGTAGGTTTTCATTTTGAAG
AGATAGAAGATGAATTCCGTTTTGTTGATTTACGTAAAAACTTAGAGTATCGTGCAGGGTTCACCAAAGAGGATTTGAAA
GCTATCCGTAGCGTGATGAAAGGTGGAAAGGCTAAAACAGCAAGTGTAGGTCAAATGATGGGCATGCCACCAACTGCTCA
AAGTGGTGGATTGGAGGATTATACACGAGATTTGACAGCTTTAGCTCGCGAGGGGAAAATTGAACCTGTTATTGGTCGCG
ATGCTGAAATTTCACGGATGATTCAAATTCTATCACGTAAAACGAAGAACAATCCTGTTTTGGTTGGCGATGCAGGTGTT
GGGAAAACAGCACTAGCATTAGGTCTTGCTCAGCGTGTTGCAGAAGGAGATGTTCCTGTCAGATTAGCAAAGATGCGTGT
TTTGGAACTTGATTTGATGAATGTTATTGCAGGAACTCGTTTCCGTGGTGACTTTGAAGAGCGGATGAATAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTTATCCTCTTTATCGATGAATTACATACTATTATGGGGTCGGGTTCGGGAATTGAT
TCAACCTTAGATGCTGCCAATATTCTCAAACCGGCCTTGGCTCGAGGGACCCTACGCACTGTTGGTGCAACGACACAGGA
TGAATACCAAAAGCATATTGAAAAAGATGCTGCCCTGGTCCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTTG
AGGACAGTATTGCCATTTTGACCGGGCTTAAAGGGACTTTTGAAAAATACCATAGGGTCCGTATTGGAGATGCGACTGTT
GAGACAGCTGTGACTTACGCCAAGAGGTATCTGACTAGTAAAAACTTGCCAGACTCAGCAATTGACTTGTTAGATGAAGC
CAGTGCAACGGTACAAAATAGAGTGAAAGGGCAGGTTGAAGAAACAGGTCTTTCAACTATTGATAAAGCTTTGATGGCTG
GAAAATACAAGACTGTCAGTAAGCTCTTAATCAAGACTACAGAAAAGAATCTGTTGAGTCAAAACGATGACTTAGAAGTG
ACAGAAGATGACATTTTGGAAACACTTAGTCGCTTATCAGGTATCCCAGTAGCCAAGCTCAGCCAATCAGATACTAAGAA
GTACCTGAATCTGGAAAAAGAATTGCACAAACGTGTGATTGGGCAGGAAGAAGCTATTTCTGCCGTTAGTAGAGCTATCC
GCCGTAATCAGTCGGGGATTCGGACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTAGGACCAACTGGTGTCGGTAAG
ACTGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTATGTTGGCTATGAAGAAGGTGGCGAATTAACAGAAA
AAGTTCGTAATAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGACGGTGTCTTGACCGATAGTAAAGGTCGCAAGGTTGATTTCTCCAATACAGTCATTATCATGACATC
AAACTTGGGGGCAACAGCTCTTCGCGATGACAAGACCGTTGGGTTTGGTGCGGCTGATCTGTCCAAAGACCACAAGGAAG
TGGAGAAACGCATTTTTGAAGAATTGAAAAAGACCTATCGTCCTGAATTTATCAACCGTATCGATGAAAAGGTAGTCTTC
CACAGCTTGACAGAATCCGATATGTTGGATGTTGTCAAAGTGATGGTGAAGCCATTGATTGTGGTTGCCGCGAGCAAGGG
AATCCTCCTGAAATTCCAACCATCAGCCCTCAAATTGTTGGCCAAAGAAGGCTACGATCCAGAAATGGGTGCTCGCCCTC
TTCGTCGGTTGCTCCAAACAAAATTGGAAGACCCGATGGCAGAAATGCTTTTGCGTGAAGATCTTGGAGCAGGTATGGTT
CTGAAAGTGGGTGTCAAAGGTAACCAACTCAAATTTGAGAGTGTGAATGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae Rx1 |
70.885 |
99.633 |
0.706 |
| clpC | Streptococcus pneumoniae D39 |
70.885 |
99.633 |
0.706 |
| clpC | Streptococcus pneumoniae TIGR4 |
70.762 |
99.633 |
0.705 |
| clpC | Streptococcus mutans UA159 |
65.602 |
99.633 |
0.654 |
| clpC | Streptococcus thermophilus LMG 18311 |
64.951 |
99.878 |
0.649 |
| clpC | Streptococcus thermophilus LMD-9 |
64.951 |
99.878 |
0.649 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.499 |
100 |
0.494 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
43.22 |
100 |
0.437 |