Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R6K63_RS11090 Genome accession   NZ_CP137556
Coordinates   2323806..2324441 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain CDC1270     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318806..2329441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6K63_RS11075 - 2319524..2320768 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  R6K63_RS11080 - 2320844..2321377 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  R6K63_RS11085 comA 2321508..2323733 (+) 2226 WP_058201285.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6K63_RS11090 exbB 2323806..2324441 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R6K63_RS11095 - 2324438..2324878 (+) 441 WP_023125617.1 ExbD/TolR family protein -
  R6K63_RS11100 lpxK 2324878..2325876 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  R6K63_RS11105 - 2325914..2326099 (+) 186 WP_003091157.1 Trm112 family protein -
  R6K63_RS11110 kdsB 2326099..2326863 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R6K63_RS11115 - 2326863..2327327 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  R6K63_RS11120 murB 2327324..2328349 (+) 1026 WP_023434479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=899065 R6K63_RS11090 WP_003091163.1 2323806..2324441(+) (exbB) [Pseudomonas aeruginosa strain CDC1270]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=899065 R6K63_RS11090 WP_003091163.1 2323806..2324441(+) (exbB) [Pseudomonas aeruginosa strain CDC1270]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCACCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81