Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   R5R33_RS08500 Genome accession   NZ_CP137555
Coordinates   1976865..1977260 (-) Length   131 a.a.
NCBI ID   WP_318955590.1    Uniprot ID   -
Organism   Microbulbifer pacificus strain SPO729     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971865..1982260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R33_RS08485 (R5R33_08485) - 1973293..1975452 (-) 2160 WP_318955587.1 methyl-accepting chemotaxis protein -
  R5R33_RS08490 (R5R33_08490) - 1975711..1976253 (-) 543 WP_318955588.1 chemotaxis protein CheW -
  R5R33_RS08495 (R5R33_08495) pilH 1976272..1976634 (-) 363 WP_318955589.1 twitching motility response regulator PilH -
  R5R33_RS08500 (R5R33_08500) pilG 1976865..1977260 (-) 396 WP_318955590.1 twitching motility response regulator PilG Regulator
  R5R33_RS08505 (R5R33_08505) gshB 1977642..1978598 (+) 957 WP_318955591.1 glutathione synthase -
  R5R33_RS08510 (R5R33_08510) - 1978685..1979614 (+) 930 WP_318955592.1 TonB family protein -
  R5R33_RS08515 (R5R33_08515) - 1979677..1980270 (+) 594 WP_318955593.1 YqgE/AlgH family protein -
  R5R33_RS08520 (R5R33_08520) ruvX 1980323..1980751 (+) 429 WP_318955594.1 Holliday junction resolvase RuvX -
  R5R33_RS08525 (R5R33_08525) hemC 1980810..1981751 (+) 942 WP_318955595.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14330.57 Da        Isoelectric Point: 7.2147

>NTDB_id=899040 R5R33_RS08500 WP_318955590.1 1976865..1977260(-) (pilG) [Microbulbifer pacificus strain SPO729]
MELNWESLTVMVIDDSKTIRRTAETLLQKAGCAVVTATDGFDALAKIADSRPDIIFVDIMMPRLDGYQTCALIKNNSEFR
STPVIMLSSKDGLFDKAKGRVVGCDQYLTKPFSKSELLGAISAHAKPHHAA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=899040 R5R33_RS08500 WP_318955590.1 1976865..1977260(-) (pilG) [Microbulbifer pacificus strain SPO729]
ATGGAGCTCAACTGGGAAAGTCTCACCGTGATGGTGATTGACGACAGTAAAACCATTCGTCGCACCGCGGAAACGCTGCT
GCAAAAAGCGGGTTGTGCGGTGGTTACCGCCACTGATGGCTTCGATGCCTTGGCCAAGATTGCCGATTCGCGTCCGGACA
TCATTTTCGTAGACATCATGATGCCGCGTCTCGACGGCTATCAGACCTGTGCGCTGATCAAGAACAACAGTGAATTTCGC
AGCACGCCGGTAATCATGCTGTCCAGCAAGGACGGCCTGTTCGATAAGGCCAAGGGTCGTGTGGTGGGTTGCGACCAGTA
TCTCACCAAGCCGTTCAGCAAAAGTGAACTGCTGGGTGCGATTTCCGCCCACGCCAAACCTCATCACGCAGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75

94.656

0.71
  vicR Streptococcus mutans UA159

41.88

89.313

0.374