Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACE1SF_RS09140 Genome accession   NZ_AP027754
Coordinates   1891716..1892231 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2017.02.04CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1886716..1897231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1SF_RS09115 (VEE51_17970) ygaZ 1887115..1887852 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  ACE1SF_RS09120 (VEE51_17980) ygaH 1887842..1888177 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  ACE1SF_RS09125 (VEE51_17990) emrR 1888268..1888798 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ACE1SF_RS09130 (VEE51_18000) emrA 1888925..1890097 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ACE1SF_RS09135 (VEE51_18010) emrB 1890114..1891652 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ACE1SF_RS09140 (VEE51_18020) luxS 1891716..1892231 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ACE1SF_RS09145 (VEE51_18030) gshA 1892381..1893937 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  ACE1SF_RS09150 (VEE51_18040) yqaA 1894010..1894438 (-) 429 WP_001287454.1 YqaA family protein -
  ACE1SF_RS09155 (VEE51_18050) yqaB 1894435..1895001 (-) 567 WP_196045156.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ACE1SF_RS09185 (VEE51_18060) csrA 1896325..1896510 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=89894 ACE1SF_RS09140 WP_001130211.1 1891716..1892231(-) (luxS) [Escherichia coli strain 2017.02.04CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89894 ACE1SF_RS09140 WP_001130211.1 1891716..1892231(-) (luxS) [Escherichia coli strain 2017.02.04CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment