Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABEG41_RS17015 Genome accession   NZ_CP155795
Coordinates   3263408..3264043 (-) Length   211 a.a.
NCBI ID   WP_003243201.1    Uniprot ID   O32197
Organism   Bacillus subtilis strain D137     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3258408..3269043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS16995 (ABEG41_16995) yvzF 3259465..3259650 (-) 186 WP_003228521.1 YvzF family protein -
  ABEG41_RS17000 (ABEG41_17000) gerAA 3259768..3261216 (+) 1449 WP_003243555.1 spore germination receptor protein GerAA -
  ABEG41_RS17005 (ABEG41_17005) gerAB 3261185..3262282 (+) 1098 WP_347002673.1 spore germination receptor protein GerAB -
  ABEG41_RS17010 (ABEG41_17010) gerAC 3262279..3263400 (+) 1122 WP_003243203.1 spore germination receptor protein GerAC -
  ABEG41_RS17015 (ABEG41_17015) vraR 3263408..3264043 (-) 636 WP_003243201.1 two-component system response regulator LiaR Regulator
  ABEG41_RS17020 (ABEG41_17020) liaS 3264021..3265103 (-) 1083 WP_003244464.1 two-component system sensor histidine kinase LiaS -
  ABEG41_RS17025 (ABEG41_17025) liaF 3265100..3265825 (-) 726 WP_015714682.1 LiaRS two-component regulatory system accessory protein LiaF -
  ABEG41_RS17030 (ABEG41_17030) liaG 3265859..3266731 (-) 873 WP_015714683.1 DUF4097 domain-containing protein -
  ABEG41_RS17035 (ABEG41_17035) liaH 3266832..3267509 (-) 678 WP_015714684.1 PspA/IM30 family protein -
  ABEG41_RS17040 (ABEG41_17040) liaI 3267536..3267916 (-) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23124.76 Da        Isoelectric Point: 4.9049

>NTDB_id=898904 ABEG41_RS17015 WP_003243201.1 3263408..3264043(-) (vraR) [Bacillus subtilis strain D137]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=898904 ABEG41_RS17015 WP_003243201.1 3263408..3264043(-) (vraR) [Bacillus subtilis strain D137]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32197

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408