Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R5Y34_RS02940 Genome accession   NZ_CP137530
Coordinates   584852..585655 (-) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis strain EXNM678     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 579852..590655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS02935 comA 582575..584794 (+) 2220 WP_152562631.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R5Y34_RS02940 comL 584852..585655 (-) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  R5Y34_RS02945 rluD 585654..586778 (+) 1125 WP_002248495.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R5Y34_RS02950 - 586930..587877 (-) 948 WP_002221255.1 bile acid:sodium symporter family protein -
  R5Y34_RS02955 pgeF 588484..589263 (+) 780 WP_002221253.1 peptidoglycan editing factor PgeF -
  R5Y34_RS02960 lptE 589315..589794 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=898837 R5Y34_RS02940 WP_002221259.1 584852..585655(-) (comL) [Neisseria meningitidis strain EXNM678]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=898837 R5Y34_RS02940 WP_002221259.1 584852..585655(-) (comL) [Neisseria meningitidis strain EXNM678]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTATACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGTATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963