Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R5Y32_RS01810 Genome accession   NZ_CP137529
Coordinates   370666..371130 (-) Length   154 a.a.
NCBI ID   WP_025463168.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM666     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365666..376130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y32_RS01770 - 365680..365925 (-) 246 WP_343366963.1 hypothetical protein -
  R5Y32_RS01775 - 366037..366465 (+) 429 WP_002226027.1 CopD family protein -
  R5Y32_RS01780 - 366477..366953 (+) 477 WP_002226026.1 CYTH domain-containing protein -
  R5Y32_RS01785 - 367303..367791 (-) 489 WP_002235430.1 dihydrofolate reductase -
  R5Y32_RS01790 aroG 367859..368914 (-) 1056 WP_002235429.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  R5Y32_RS01795 - 369076..369303 (-) 228 WP_153310284.1 hypothetical protein -
  R5Y32_RS01800 - 369530..369838 (+) 309 WP_017629289.1 membrane protein -
  R5Y32_RS01805 - 369887..369991 (-) 105 Protein_341 IS1595 family transposase -
  R5Y32_RS01810 comE 370666..371130 (-) 465 WP_025463168.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16561.83 Da        Isoelectric Point: 10.9695

>NTDB_id=898789 R5Y32_RS01810 WP_025463168.1 370666..371130(-) (comE) [Neisseria meningitidis strain EXNM666]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=898789 R5Y32_RS01810 WP_025463168.1 370666..371130(-) (comE) [Neisseria meningitidis strain EXNM666]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74