Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   R5Y32_RS01285 Genome accession   NZ_CP137529
Coordinates   268540..269184 (-) Length   214 a.a.
NCBI ID   WP_002224916.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM666     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263540..274184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y32_RS01250 ftsL 263925..264188 (-) 264 WP_002220363.1 cell division protein FtsL -
  R5Y32_RS01255 rsmH 264185..265171 (-) 987 WP_002224919.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  R5Y32_RS01260 mraZ 265168..265623 (-) 456 WP_002224918.1 division/cell wall cluster transcriptional repressor MraZ -
  R5Y32_RS01265 - 265902..267113 (+) 1212 WP_010980791.1 class I SAM-dependent methyltransferase -
  R5Y32_RS01280 - 267686..268507 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  R5Y32_RS01285 dsbA1 268540..269184 (-) 645 WP_002224916.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  R5Y32_RS01290 ftsN 269187..270050 (-) 864 WP_002243994.1 cell division protein FtsN -
  R5Y32_RS01295 comM 270156..271652 (-) 1497 WP_002224914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5Y32_RS01300 - 271666..271986 (-) 321 WP_002212476.1 accessory factor UbiK family protein -
  R5Y32_RS01305 putP 272469..273995 (+) 1527 WP_002224913.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23983.98 Da        Isoelectric Point: 9.8294

>NTDB_id=898784 R5Y32_RS01285 WP_002224916.1 268540..269184(-) (dsbA1) [Neisseria meningitidis strain EXNM666]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=898784 R5Y32_RS01285 WP_002224916.1 268540..269184(-) (dsbA1) [Neisseria meningitidis strain EXNM666]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTTTGGCTAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449