Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ABD426_RS08040 Genome accession   NZ_CP155739
Coordinates   1581412..1582446 (-) Length   344 a.a.
NCBI ID   WP_023611934.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 997/08     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576412..1587446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD426_RS08000 (ABD426_07970) - 1576738..1576893 (-) 156 WP_002988678.1 hypothetical protein -
  ABD426_RS08005 (ABD426_07975) - 1577168..1577569 (+) 402 WP_011285676.1 helix-turn-helix domain-containing protein -
  ABD426_RS08010 (ABD426_07980) - 1577583..1577966 (+) 384 WP_002988673.1 ImmA/IrrE family metallo-endopeptidase -
  ABD426_RS08015 (ABD426_07985) - 1577977..1578528 (+) 552 WP_002988670.1 hypothetical protein -
  ABD426_RS08020 (ABD426_07990) - 1578645..1579724 (+) 1080 WP_002988667.1 site-specific integrase -
  ABD426_RS08030 (ABD426_08000) trmB 1579922..1580557 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABD426_RS08035 (ABD426_08005) ccrZ 1580557..1581348 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ABD426_RS08040 (ABD426_08010) pptB 1581412..1582446 (-) 1035 WP_023611934.1 ABC transporter permease Regulator
  ABD426_RS08045 (ABD426_08015) pptA 1582449..1583174 (-) 726 WP_023611908.1 ABC transporter ATP-binding protein Regulator
  ABD426_RS08050 (ABD426_08020) - 1583246..1583665 (+) 420 WP_023611931.1 HIT family protein -
  ABD426_RS08055 (ABD426_08025) - 1583662..1584018 (+) 357 WP_014407784.1 hypothetical protein -
  ABD426_RS08060 (ABD426_08030) - 1584129..1585412 (-) 1284 WP_023611938.1 LCP family protein -
  ABD426_RS08065 (ABD426_08035) - 1585421..1585945 (-) 525 WP_023611919.1 GNAT family N-acetyltransferase -
  ABD426_RS08070 (ABD426_08040) tsaE 1585920..1586381 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40260.49 Da        Isoelectric Point: 10.3713

>NTDB_id=898556 ABD426_RS08040 WP_023611934.1 1581412..1582446(-) (pptB) [Streptococcus pyogenes strain 997/08]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSMLKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=898556 ABD426_RS08040 WP_023611934.1 1581412..1582446(-) (pptB) [Streptococcus pyogenes strain 997/08]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATGTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

42.733

100

0.427
  pptB Streptococcus salivarius strain HSISS4

42.442

100

0.424