Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   M2Z51_RS09125 Genome accession   NZ_AP024967
Coordinates   2024321..2025688 (-) Length   455 a.a.
NCBI ID   WP_001953102.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2019321..2030688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS09090 (V130003_18160) moaE 2020043..2020495 (-) 453 WP_001914666.1 molybdopterin synthase catalytic subunit MoaE -
  M2Z51_RS09095 (V130003_18170) moaD 2020497..2020742 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  M2Z51_RS09100 (V130003_18180) moaC 2020739..2021218 (-) 480 WP_000080907.1 cyclic pyranopterin monophosphate synthase MoaC -
  M2Z51_RS09105 (V130003_18190) moaB 2021229..2021741 (-) 513 WP_123161409.1 molybdenum cofactor biosynthesis protein B -
  M2Z51_RS09110 (V130003_18200) moaA 2021801..2022790 (-) 990 WP_000068566.1 GTP 3',8-cyclase MoaA -
  M2Z51_RS09115 (V130003_18210) - 2023097..2023987 (+) 891 WP_000061075.1 YvcK family protein -
  M2Z51_RS09120 (V130003_18220) luxU 2023976..2024317 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  M2Z51_RS09125 (V130003_18230) luxO 2024321..2025688 (-) 1368 WP_001953102.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  M2Z51_RS09130 (V130003_18240) uvrB 2026118..2028147 (-) 2030 Protein_1770 excinuclease ABC subunit UvrB -
  M2Z51_RS09140 (V130003_18260) rsxA 2029029..2029610 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  M2Z51_RS09145 (V130003_18270) rsxB 2029610..2030197 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50867.18 Da        Isoelectric Point: 5.5755

>NTDB_id=89799 M2Z51_RS09125 WP_001953102.1 2024321..2025688(-) (luxO) [Vibrio cholerae strain V130003]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSVPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=89799 M2Z51_RS09125 WP_001953102.1 2024321..2025688(-) (luxO) [Vibrio cholerae strain V130003]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGTCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCTGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGTGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTCGTGCTTAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGTGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAGCAAGCCATCGAAGCGTGTGATGGTAACATTCCTCGCGCCGC
GACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment