Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   R5H20_RS20580 Genome accession   NZ_CP137345
Coordinates   4010238..4010927 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus sp. KICET-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4005238..4015927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS20545 (R5H20_20545) - 4005388..4005870 (-) 483 WP_029419581.1 flagellar protein FlgN -
  R5H20_RS20550 (R5H20_20550) flgM 4005885..4006148 (-) 264 WP_006639261.1 flagellar biosynthesis anti-sigma factor FlgM -
  R5H20_RS20555 (R5H20_20555) - 4006228..4006647 (-) 420 WP_006639262.1 TIGR03826 family flagellar region protein -
  R5H20_RS20560 (R5H20_20560) comFC 4006705..4007439 (-) 735 WP_006639263.1 ComF family protein Machinery gene
  R5H20_RS20565 (R5H20_20565) - 4007396..4007680 (-) 285 WP_006639264.1 late competence development ComFB family protein -
  R5H20_RS20570 (R5H20_20570) comFA 4007737..4009083 (-) 1347 WP_006639265.1 DEAD/DEAH box helicase Machinery gene
  R5H20_RS20575 (R5H20_20575) - 4009276..4010118 (-) 843 WP_006639266.1 DegV family protein -
  R5H20_RS20580 (R5H20_20580) degU 4010238..4010927 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  R5H20_RS20585 (R5H20_20585) degS 4011009..4012166 (-) 1158 WP_006639267.1 sensor histidine kinase Regulator
  R5H20_RS20590 (R5H20_20590) - 4012388..4013026 (+) 639 WP_006639268.1 YigZ family protein -
  R5H20_RS20595 (R5H20_20595) - 4013043..4014122 (+) 1080 WP_006639269.1 LCP family protein -
  R5H20_RS20600 (R5H20_20600) - 4014265..4015329 (-) 1065 WP_006639270.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=897616 R5H20_RS20580 WP_003185730.1 4010238..4010927(-) (degU) [Bacillus sp. KICET-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=897616 R5H20_RS20580 WP_003185730.1 4010238..4010927(-) (degU) [Bacillus sp. KICET-3]
GTGACTAAAGTAAATATTGTAATTATTGATGATCATCAGTTATTCCGAGAAGGTGTCAAACGGATTTTGGATTTTGAGCC
TACTTTTGAGGTAGTGGCTGAAGGAGACGACGGTGATGAAGCGGCTCGCATCGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATTAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAGCTTGTCGATTTGTATCCTGAATCAAAGGTC
ATTATTCTATCGATCCATGATGACGAAAACTATGTGACACATGCGTTGAAAACCGGAGCGCGCGGCTATCTGCTGAAAGA
AATGGACGCAGATACATTGATTGAAGCCGTTAAGGTAGTGGCAGAAGGCGGTTCTTATCTTCACCCTAAAGTAACGCACA
ATCTTGTCAATGAATTCCGCCGTCTGGCAACAAGCGGTGTGTCATCACACGCTCAGCACGAAGTATATCCGGAAATCCGC
AGACCTTTGCACATTTTGACAAGACGGGAATGCGAAGTTTTACAGATGCTCGCGGACGGAAAAAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTGCAGAAAATGAATGTCAATGACAGAA
CTCAAGCTGTAGTTGTGGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987