Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R5H20_RS18675 Genome accession   NZ_CP137345
Coordinates   3642115..3642753 (-) Length   212 a.a.
NCBI ID   WP_006638893.1    Uniprot ID   M5PCK2
Organism   Bacillus sp. KICET-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637115..3647753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS18640 (R5H20_18640) - 3638297..3638728 (+) 432 WP_006638886.1 Na(+)/H(+) antiporter subunit B -
  R5H20_RS18645 (R5H20_18645) - 3638728..3639069 (+) 342 WP_006638887.1 Na(+)/H(+) antiporter subunit C -
  R5H20_RS18650 (R5H20_18650) - 3639062..3640540 (+) 1479 WP_006638888.1 Na+/H+ antiporter subunit D -
  R5H20_RS18655 (R5H20_18655) - 3640546..3641022 (+) 477 WP_006638889.1 Na+/H+ antiporter subunit E -
  R5H20_RS18660 (R5H20_18660) - 3641022..3641306 (+) 285 WP_006638890.1 Na(+)/H(+) antiporter subunit F1 -
  R5H20_RS18665 (R5H20_18665) mnhG 3641290..3641664 (+) 375 WP_006638891.1 monovalent cation/H(+) antiporter subunit G -
  R5H20_RS18670 (R5H20_18670) - 3641704..3642096 (-) 393 WP_006638892.1 hotdog fold thioesterase -
  R5H20_RS18675 (R5H20_18675) comA 3642115..3642753 (-) 639 WP_006638893.1 response regulator transcription factor Regulator
  R5H20_RS18680 (R5H20_18680) comP 3642835..3645147 (-) 2313 WP_006638894.1 ATP-binding protein Regulator
  R5H20_RS18685 (R5H20_18685) comX 3645162..3645335 (-) 174 WP_006638895.1 competence pheromone ComX -
  R5H20_RS18690 (R5H20_18690) - 3645319..3646218 (-) 900 WP_006638896.1 polyprenyl synthetase family protein -
  R5H20_RS18695 (R5H20_18695) degQ 3646407..3646547 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  R5H20_RS18700 (R5H20_18700) - 3647040..3647381 (+) 342 WP_224254434.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24167.50 Da        Isoelectric Point: 4.5867

>NTDB_id=897607 R5H20_RS18675 WP_006638893.1 3642115..3642753(-) (comA) [Bacillus sp. KICET-3]
MRRLLVIDDHPAVMEGTKAILETNQDFLVDCLSPEASEQFLTKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYLKDLITQQKTKSNSQETQHDVLTERERLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFNKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=897607 R5H20_RS18675 WP_006638893.1 3642115..3642753(-) (comA) [Bacillus sp. KICET-3]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAGACGAACCAGGATTT
TCTTGTGGATTGCCTCAGCCCGGAAGCCAGCGAACAATTTCTGACTAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTGAATCTGGGTGAAATCAACGGAATGGACCTCTCTAAGAAAATCCTTGAGACCTGTTCATCATGCAAAATTATT
GTGTACACCGGATACGAAGTTGAGGATTATTTTGAGGAAGCGATCCGGTCCGGCATGCATGGTGCGATTAGCAAAACAGA
GTCGAAAGAAAAGATTATTGAATACATATATCAAGTATTGGATAACAAAATTGTCGTTGACTATGATTACTTGAAGGATC
TGATCACCCAGCAAAAAACGAAATCAAACAGCCAAGAGACCCAGCATGATGTATTGACCGAGAGAGAACGCCTGATTTTA
AAAGAAGTTGAAAAAGGCTATACGAATCAGGAGATTGCCGATGCGCTGCATCTGAGCAAGCGTTCGATCGAATACAGTCT
GACGTCCGTATTTAATAAACTGAATGTCGGTTCACGTACGGAAGCCGTTTTGATTGCAAAATCTGAAGGCGTGCTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(150-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PCK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

76.168

100

0.769