Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | OHP008_RS02625 | Genome accession | NZ_AP024965 |
| Coordinates | 550760..551164 (+) | Length | 134 a.a. |
| NCBI ID | WP_180497313.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 545760..556164
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHP008_RS02590 (OHP008_05220) | - | 545941..546879 (-) | 939 | WP_223888609.1 | tetraacyldisaccharide 4'-kinase | - |
| OHP008_RS02595 (OHP008_05230) | - | 546876..547658 (-) | 783 | WP_223888610.1 | NAD+ synthase | - |
| OHP008_RS02605 (OHP008_05240) | ilvC | 547909..548901 (+) | 993 | WP_223888611.1 | ketol-acid reductoisomerase | - |
| OHP008_RS02610 (OHP008_05250) | minD | 548920..549726 (+) | 807 | WP_223888612.1 | septum site-determining protein MinD | - |
| OHP008_RS02615 (OHP008_05260) | minE | 549723..549956 (+) | 234 | WP_154426255.1 | cell division topological specificity factor MinE | - |
| OHP008_RS02620 (OHP008_05270) | dprA | 549963..550763 (+) | 801 | WP_180503901.1 | DNA-processing protein DprA | Machinery gene |
| OHP008_RS02625 (OHP008_05280) | dprB | 550760..551164 (+) | 405 | WP_180497313.1 | Holliday junction resolvase RuvX | Machinery gene |
| OHP008_RS02630 (OHP008_05290) | - | 551396..551848 (+) | 453 | WP_180445412.1 | tetratricopeptide repeat protein | - |
| OHP008_RS02635 (OHP008_05300) | - | 552034..552372 (+) | 339 | WP_000699885.1 | hypothetical protein | - |
| OHP008_RS02640 (OHP008_05310) | - | 552356..552916 (+) | 561 | WP_223888613.1 | hypothetical protein | - |
| OHP008_RS02645 (OHP008_05320) | - | 553004..553885 (-) | 882 | WP_223888614.1 | RluA family pseudouridine synthase | - |
| OHP008_RS02650 (OHP008_05330) | recJ | 553885..555435 (-) | 1551 | WP_223888615.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15185.58 Da Isoelectric Point: 8.7284
>NTDB_id=89758 OHP008_RS02625 WP_180497313.1 550760..551164(+) (dprB) [Helicobacter pylori strain #8]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVGFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVGFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=89758 OHP008_RS02625 WP_180497313.1 550760..551164(+) (dprB) [Helicobacter pylori strain #8]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGGTTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGGTTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
93.284 |
100 |
0.933 |