Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | OHP008_RS00495 | Genome accession | NZ_AP024965 |
| Coordinates | 108355..108930 (+) | Length | 191 a.a. |
| NCBI ID | WP_223888395.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #8 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 103355..113930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHP008_RS00470 (OHP008_00940) | uvrD | 104041..106089 (+) | 2049 | WP_223888393.1 | DNA helicase UvrD | - |
| OHP008_RS00475 (OHP008_00950) | flgA | 106086..106742 (+) | 657 | WP_223888394.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| OHP008_RS00480 (OHP008_00960) | - | 106752..107315 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| OHP008_RS00485 (OHP008_00970) | coaD | 107315..107788 (+) | 474 | WP_001169274.1 | pantetheine-phosphate adenylyltransferase | - |
| OHP008_RS00490 (OHP008_00980) | tmk | 107792..108367 (+) | 576 | WP_096424346.1 | dTMP kinase | - |
| OHP008_RS00495 (OHP008_00990) | comFC | 108355..108930 (+) | 576 | WP_223888395.1 | ComF family protein | Machinery gene |
| OHP008_RS00500 (OHP008_01000) | - | 108963..111002 (+) | 2040 | WP_223888396.1 | class I SAM-dependent DNA methyltransferase | - |
| OHP008_RS00505 (OHP008_01010) | - | 111032..111619 (+) | 588 | Protein_97 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21370.95 Da Isoelectric Point: 9.0939
>NTDB_id=89746 OHP008_RS00495 WP_223888395.1 108355..108930(+) (comFC) [Helicobacter pylori strain #8]
MRCLTCLKLSFKPLCSNCLNDLPLILRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLILRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=89746 OHP008_RS00495 WP_223888395.1 108355..108930(+) (comFC) [Helicobacter pylori strain #8]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTTCAAATTGCTTGAACGATTTGCCCCTAATCTTAAG
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCATTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTTCAAATTGCTTGAACGATTTGCCCCTAATCTTAAG
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCATTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |