Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LDM87_RS05650 Genome accession   NZ_AP024964
Coordinates   1188075..1188479 (-) Length   134 a.a.
NCBI ID   WP_075645903.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1183075..1193479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS05600 (OHP006_11210) - 1183079..1184204 (-) 1126 Protein_1104 hypothetical protein -
  LDM87_RS05605 - 1184194..1184979 (-) 786 WP_223892690.1 hypothetical protein -
  LDM87_RS05610 - 1184979..1185365 (-) 387 WP_223892691.1 DUF1294 domain-containing protein -
  LDM87_RS05615 (OHP006_11230) - 1185450..1185644 (-) 195 WP_172414439.1 hypothetical protein -
  LDM87_RS05620 - 1185702..1185863 (-) 162 WP_014536434.1 lysozyme -
  LDM87_RS05625 (OHP006_11240) - 1185911..1186381 (-) 471 WP_223892692.1 glycoside hydrolase family protein -
  LDM87_RS05630 (OHP006_11250) - 1186392..1186952 (-) 561 WP_000043918.1 hypothetical protein -
  LDM87_RS05635 (OHP006_11260) - 1186936..1187274 (-) 339 WP_000699916.1 hypothetical protein -
  LDM87_RS05640 (OHP006_11270) - 1187475..1187967 (-) 493 Protein_1112 tetratricopeptide repeat protein -
  LDM87_RS05650 (OHP006_11280) dprB 1188075..1188479 (-) 405 WP_075645903.1 Holliday junction resolvase RuvX Machinery gene
  LDM87_RS05655 (OHP006_11290) dprA 1188476..1189276 (-) 801 WP_223892694.1 DNA-processing protein DprA Machinery gene
  LDM87_RS05660 (OHP006_11300) minE 1189288..1189521 (-) 234 WP_130777953.1 cell division topological specificity factor MinE -
  LDM87_RS05665 (OHP006_11310) minD 1189518..1190324 (-) 807 WP_223892695.1 septum site-determining protein MinD -
  LDM87_RS05670 (OHP006_11320) ilvC 1190349..1191341 (-) 993 WP_223892696.1 ketol-acid reductoisomerase -
  LDM87_RS05680 (OHP006_11330) - 1191590..1192372 (+) 783 WP_223892697.1 NAD+ synthase -
  LDM87_RS05685 (OHP006_11340) - 1192369..1193307 (+) 939 WP_223892698.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15279.82 Da        Isoelectric Point: 9.5494

>NTDB_id=89735 LDM87_RS05650 WP_075645903.1 1188075..1188479(-) (dprB) [Helicobacter pylori strain #6]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=89735 LDM87_RS05650 WP_075645903.1 1188075..1188479(-) (dprB) [Helicobacter pylori strain #6]
GTGATTTTGGCATGCGATGTAGGCTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment