Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LDM87_RS00270 | Genome accession | NZ_AP024964 |
| Coordinates | 60717..61292 (+) | Length | 191 a.a. |
| NCBI ID | WP_223893093.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #6 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55717..66292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM87_RS00245 (OHP006_00490) | uvrD | 56408..58453 (+) | 2046 | WP_223893074.1 | DNA helicase UvrD | - |
| LDM87_RS00250 (OHP006_00500) | flgA | 58450..59106 (+) | 657 | WP_223893076.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| LDM87_RS00255 (OHP006_00510) | - | 59116..59679 (+) | 564 | WP_223893078.1 | UbiX family flavin prenyltransferase | - |
| LDM87_RS00260 (OHP006_00520) | coaD | 59679..60152 (+) | 474 | WP_212854690.1 | pantetheine-phosphate adenylyltransferase | - |
| LDM87_RS00265 (OHP006_00530) | tmk | 60154..60729 (+) | 576 | WP_223893086.1 | dTMP kinase | - |
| LDM87_RS00270 (OHP006_00540) | comFC | 60717..61292 (+) | 576 | WP_223893093.1 | ComF family protein | Machinery gene |
| LDM87_RS00275 (OHP006_00550) | - | 61325..61687 (+) | 363 | Protein_53 | N-6 DNA methylase | - |
| LDM87_RS00280 (OHP006_00560) | - | 61693..62460 (-) | 768 | WP_001183570.1 | Eco47II family restriction endonuclease | - |
| LDM87_RS00285 (OHP006_00570) | - | 62429..63460 (-) | 1032 | WP_031249189.1 | DNA cytosine methyltransferase | - |
| LDM87_RS07910 (OHP006_00580) | - | 63510..64654 (+) | 1145 | Protein_56 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21371.04 Da Isoelectric Point: 9.4243
>NTDB_id=89725 LDM87_RS00270 WP_223893093.1 60717..61292(+) (comFC) [Helicobacter pylori strain #6]
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAYFAIALCSADE
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAYFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=89725 LDM87_RS00270 WP_223893093.1 60717..61292(+) (comFC) [Helicobacter pylori strain #6]
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGTACTTTGCAATCGCGCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGTACTTTGCAATCGCGCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |