Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ABC804_RS08505 Genome accession   NZ_CP155536
Coordinates   1609247..1610296 (-) Length   349 a.a.
NCBI ID   WP_000653752.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1604247..1615296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS08475 (ABC804_08470) - 1604425..1605786 (+) 1362 WP_001069092.1 bacteriocin secretion accessory protein -
  ABC804_RS08480 (ABC804_08475) blpC 1605843..1605998 (+) 156 WP_000358813.1 quorum-sensing system pheromone BlpC -
  ABC804_RS08485 (ABC804_08480) - 1606040..1607380 (-) 1341 WP_001017622.1 sensor histidine kinase -
  ABC804_RS08490 (ABC804_08485) comE/blpR 1607394..1608131 (-) 738 WP_001219127.1 response regulator transcription factor Regulator
  ABC804_RS08495 (ABC804_08490) - 1608136..1608474 (-) 339 WP_000682119.1 LytTR family DNA-binding domain-containing protein -
  ABC804_RS08500 (ABC804_08495) - 1608750..1609079 (+) 330 WP_000132570.1 hypothetical protein -
  ABC804_RS08505 (ABC804_08500) pptB 1609247..1610296 (-) 1050 WP_000653752.1 ABC transporter permease Regulator
  ABC804_RS08510 (ABC804_08505) pptA 1610293..1611024 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ABC804_RS08515 (ABC804_08510) - 1611092..1611502 (+) 411 WP_001278301.1 HIT family protein -
  ABC804_RS08520 (ABC804_08515) - 1611512..1611799 (+) 288 WP_000777760.1 hypothetical protein -
  ABC804_RS08525 (ABC804_08520) - 1611961..1612155 (+) 195 WP_001808905.1 hypothetical protein -
  ABC804_RS08530 (ABC804_08525) dnaJ 1612477..1613613 (-) 1137 WP_001066293.1 molecular chaperone DnaJ -
  ABC804_RS08535 (ABC804_08530) - 1613818..1614171 (-) 354 WP_000115730.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40652.84 Da        Isoelectric Point: 9.9405

>NTDB_id=897221 ABC804_RS08505 WP_000653752.1 1609247..1610296(-) (pptB) [Streptococcus pneumoniae strain M264-3]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=897221 ABC804_RS08505 WP_000653752.1 1609247..1610296(-) (pptB) [Streptococcus pneumoniae strain M264-3]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467