Detailed information NTG0089716

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: LDM85_RS06910
• Genome accession: NZ_AP024963
• Coordinates: 1429119..1430081 (-)
• Length: 320 a.a.
• NCBI ID: WP_001870928.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1424119..1435081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDM85_RS06890 (OHP005_13860)	-	1424424..1425356 (-)	933	WP_180413159.1	GDP-L-fucose synthase	-
LDM85_RS06895 (OHP005_13870)	gmd	1425349..1426494 (-)	1146	WP_187832471.1	GDP-mannose 4,6-dehydratase	-
LDM85_RS06900 (OHP005_13880)	-	1426509..1427920 (-)	1412	Protein_1354	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LDM85_RS06905 (OHP005_13890)	comB10	1427990..1429126 (-)	1137	WP_001045730.1	DNA type IV secretion system protein ComB10	Machinery gene
LDM85_RS06910 (OHP005_13900)	comB9	1429119..1430081 (-)	963	WP_001870928.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LDM85_RS06915 (OHP005_13910)	comB8	1430081..1430818 (-)	738	WP_000660542.1	virB8 family protein	Machinery gene
LDM85_RS06920	comB7	1430815..1430940 (-)	126	WP_000688336.1	hypothetical protein	Machinery gene
LDM85_RS06925 (OHP005_13920)	comB6	1430956..1432011 (-)	1056	WP_223887936.1	P-type conjugative transfer protein TrbL	Machinery gene
LDM85_RS06930 (OHP005_13930)	-	1432019..1433014 (-)	996	WP_223887937.1	PDZ domain-containing protein	-
LDM85_RS06935 (OHP005_13940)	-	1433014..1433307 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
LDM85_RS06940 (OHP005_13950)	panD	1433318..1433668 (-)	351	WP_073470207.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36741.33 Da
• Isoelectric Point: 9.2454

>NTDB_id=89716 LDM85_RS06910 WP_001870928.1 1429119..1430081(-) (comB9) [Helicobacter pylori strain #5]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPAILNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=89716 LDM85_RS06910 WP_001870928.1 1429119..1430081(-) (comB9) [Helicobacter pylori strain #5]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGATTTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCTCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAGCACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATCTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934