Detailed information NTG0089719

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: LDM85_RS06925
• Genome accession: NZ_AP024963
• Coordinates: 1430956..1432011 (-)
• Length: 351 a.a.
• NCBI ID: WP_223887936.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1425956..1437011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDM85_RS06900 (OHP005_13880)	-	1426509..1427920 (-)	1412	Protein_1354	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LDM85_RS06905 (OHP005_13890)	comB10	1427990..1429126 (-)	1137	WP_001045730.1	DNA type IV secretion system protein ComB10	Machinery gene
LDM85_RS06910 (OHP005_13900)	comB9	1429119..1430081 (-)	963	WP_001870928.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LDM85_RS06915 (OHP005_13910)	comB8	1430081..1430818 (-)	738	WP_000660542.1	virB8 family protein	Machinery gene
LDM85_RS06920	comB7	1430815..1430940 (-)	126	WP_000688336.1	hypothetical protein	Machinery gene
LDM85_RS06925 (OHP005_13920)	comB6	1430956..1432011 (-)	1056	WP_223887936.1	P-type conjugative transfer protein TrbL	Machinery gene
LDM85_RS06930 (OHP005_13930)	-	1432019..1433014 (-)	996	WP_223887937.1	PDZ domain-containing protein	-
LDM85_RS06935 (OHP005_13940)	-	1433014..1433307 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
LDM85_RS06940 (OHP005_13950)	panD	1433318..1433668 (-)	351	WP_073470207.1	aspartate 1-decarboxylase	-
LDM85_RS06945 (OHP005_13960)	-	1433658..1435880 (-)	2223	WP_223887470.1	ATP-dependent Clp protease ATP-binding subunit	-
LDM85_RS06950 (OHP005_13970)	-	1435880..1436155 (-)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
LDM85_RS06955 (OHP005_13980)	-	1436175..1436588 (-)	414	WP_033587787.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39809.74 Da
• Isoelectric Point: 8.8165

>NTDB_id=89719 LDM85_RS06925 WP_223887936.1 1430956..1432011(-) (comB6) [Helicobacter pylori strain #5]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPSVSSSVSSSTRESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=89719 LDM85_RS06925 WP_223887936.1 1430956..1432011(-) (comB6) [Helicobacter pylori strain #5]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAATGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCATCCGTTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974