Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LDM85_RS02180 Genome accession   NZ_AP024963
Coordinates   450741..451145 (+) Length   134 a.a.
NCBI ID   WP_000599254.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 445741..456145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS02145 (OHP005_04460) - 445913..446851 (-) 939 WP_212889449.1 tetraacyldisaccharide 4'-kinase -
  LDM85_RS02150 (OHP005_04470) - 446848..447630 (-) 783 WP_223887748.1 NAD+ synthase -
  LDM85_RS02160 (OHP005_04480) ilvC 447879..448871 (+) 993 WP_223887749.1 ketol-acid reductoisomerase -
  LDM85_RS02165 (OHP005_04490) minD 448896..449702 (+) 807 WP_001019097.1 septum site-determining protein MinD -
  LDM85_RS02170 (OHP005_04500) minE 449699..449932 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  LDM85_RS02175 (OHP005_04510) dprA 449944..450744 (+) 801 WP_223887750.1 DNA-processing protein DprA Machinery gene
  LDM85_RS02180 (OHP005_04520) dprB 450741..451145 (+) 405 WP_000599254.1 Holliday junction resolvase RuvX Machinery gene
  LDM85_RS02185 (OHP005_04530) - 451308..451637 (+) 330 WP_223887751.1 tetratricopeptide repeat protein -
  LDM85_RS02190 (OHP005_04540) - 451825..452163 (+) 339 WP_015087093.1 hypothetical protein -
  LDM85_RS02195 (OHP005_04550) - 452147..452707 (+) 561 WP_050827825.1 hypothetical protein -
  LDM85_RS02200 (OHP005_04560) - 452718..453218 (+) 501 WP_223887752.1 glycoside hydrolase family protein -
  LDM85_RS02205 - 453238..453399 (+) 162 WP_017282730.1 hypothetical protein -
  LDM85_RS02210 (OHP005_04570) - 453455..453652 (+) 198 WP_001869324.1 hypothetical protein -
  LDM85_RS02215 - 453740..454121 (+) 382 Protein_443 DUF1294 domain-containing protein -
  LDM85_RS02220 - 454121..454906 (+) 786 WP_223887753.1 hypothetical protein -
  LDM85_RS02225 (OHP005_04590) - 454896..455987 (+) 1092 WP_223887754.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15371.91 Da        Isoelectric Point: 9.5494

>NTDB_id=89710 LDM85_RS02180 WP_000599254.1 450741..451145(+) (dprB) [Helicobacter pylori strain #5]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNKSYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQFLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=89710 LDM85_RS02180 WP_000599254.1 450741..451145(+) (dprB) [Helicobacter pylori strain #5]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACAAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGTCAGCAGTTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment