Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LDM86_RS07345 | Genome accession | NZ_AP024962 |
| Coordinates | 1521205..1521780 (-) | Length | 191 a.a. |
| NCBI ID | WP_223889139.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #3 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1516205..1526780
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM86_RS07335 | - | 1517890..1519136 (-) | 1247 | Protein_1439 | restriction endonuclease subunit S | - |
| LDM86_RS07340 (OHP003_14610) | - | 1519133..1521172 (-) | 2040 | WP_223889138.1 | class I SAM-dependent DNA methyltransferase | - |
| LDM86_RS07345 (OHP003_14620) | comFC | 1521205..1521780 (-) | 576 | WP_223889139.1 | ComF family protein | Machinery gene |
| LDM86_RS07350 (OHP003_14630) | tmk | 1521768..1522343 (-) | 576 | WP_223889140.1 | dTMP kinase | - |
| LDM86_RS07355 (OHP003_14640) | coaD | 1522345..1522818 (-) | 474 | WP_220833375.1 | pantetheine-phosphate adenylyltransferase | - |
| LDM86_RS07360 (OHP003_14650) | - | 1522818..1523381 (-) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| LDM86_RS07365 (OHP003_14660) | flgA | 1523391..1524047 (-) | 657 | WP_223889141.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| LDM86_RS07370 (OHP003_14670) | uvrD | 1524044..1526089 (-) | 2046 | WP_212885271.1 | ATP-dependent helicase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21379.05 Da Isoelectric Point: 9.2796
>NTDB_id=89702 LDM86_RS07345 WP_223889139.1 1521205..1521780(-) (comFC) [Helicobacter pylori strain #3]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKILNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKILNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=89702 LDM86_RS07345 WP_223889139.1 1521205..1521780(-) (comFC) [Helicobacter pylori strain #3]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACTCTAAAGGAAGCCCTAAAATACCTTAAAATCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACTCTAAAGGAAGCCCTAAAATACCTTAAAATCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |