Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ABC799_RS08525 Genome accession   NZ_CP155534
Coordinates   1632506..1633555 (-) Length   349 a.a.
NCBI ID   WP_000653767.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain DCC1476     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1627506..1638555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC799_RS08495 (ABC799_08495) - 1627683..1629044 (+) 1362 WP_001069091.1 bacteriocin secretion accessory protein -
  ABC799_RS08500 (ABC799_08500) blpC 1629101..1629256 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  ABC799_RS08505 (ABC799_08505) - 1629298..1630638 (-) 1341 WP_001017638.1 sensor histidine kinase -
  ABC799_RS08510 (ABC799_08510) comE/blpR 1630652..1631389 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  ABC799_RS08515 (ABC799_08515) - 1631394..1631732 (-) 339 WP_000682135.1 LytTR family DNA-binding domain-containing protein -
  ABC799_RS08520 (ABC799_08520) - 1632009..1632338 (+) 330 WP_000132572.1 hypothetical protein -
  ABC799_RS08525 (ABC799_08525) pptB 1632506..1633555 (-) 1050 WP_000653767.1 ABC transporter permease Regulator
  ABC799_RS08530 (ABC799_08530) pptA 1633552..1634283 (-) 732 WP_000889925.1 ABC transporter ATP-binding protein Regulator
  ABC799_RS08535 (ABC799_08535) - 1634351..1634761 (+) 411 WP_001278299.1 HIT family protein -
  ABC799_RS08540 (ABC799_08540) - 1634771..1635058 (+) 288 WP_000777760.1 hypothetical protein -
  ABC799_RS08545 (ABC799_08545) - 1635220..1635459 (+) 240 WP_001810235.1 hypothetical protein -
  ABC799_RS08550 (ABC799_08550) dnaJ 1635793..1636929 (-) 1137 WP_001810236.1 molecular chaperone DnaJ -
  ABC799_RS08555 (ABC799_08555) - 1637331..1637687 (-) 357 WP_000114433.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40570.64 Da        Isoelectric Point: 10.0008

>NTDB_id=896975 ABC799_RS08525 WP_000653767.1 1632506..1633555(-) (pptB) [Streptococcus pneumoniae strain DCC1476]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=896975 ABC799_RS08525 WP_000653767.1 1632506..1633555(-) (pptB) [Streptococcus pneumoniae strain DCC1476]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTATTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATTCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTGGTTCTCTTTAACTACCTCTTGCTCTTTCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCACTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47