Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LDM86_RS02165 Genome accession   NZ_AP024962
Coordinates   446593..446997 (+) Length   134 a.a.
NCBI ID   WP_223889395.1    Uniprot ID   -
Organism   Helicobacter pylori strain #3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 441593..451997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM86_RS02130 (OHP003_04380) - 441772..442710 (-) 939 WP_223889391.1 tetraacyldisaccharide 4'-kinase -
  LDM86_RS02135 (OHP003_04390) - 442707..443489 (-) 783 WP_223889392.1 NAD+ synthase -
  LDM86_RS02145 (OHP003_04400) ilvC 443737..444729 (+) 993 WP_223889393.1 ketol-acid reductoisomerase -
  LDM86_RS02150 (OHP003_04410) minD 444748..445554 (+) 807 WP_120944752.1 septum site-determining protein MinD -
  LDM86_RS02155 (OHP003_04420) minE 445551..445784 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  LDM86_RS02160 (OHP003_04430) dprA 445796..446596 (+) 801 WP_223889394.1 DNA-processing protein DprA Machinery gene
  LDM86_RS02165 (OHP003_04440) dprB 446593..446997 (+) 405 WP_223889395.1 Holliday junction resolvase RuvX Machinery gene
  LDM86_RS02170 (OHP003_04450) - 447108..447749 (+) 642 WP_407057707.1 tetratricopeptide repeat protein -
  LDM86_RS07760 (OHP003_04460) - 447789..447977 (+) 189 WP_407057705.1 hypothetical protein -
  LDM86_RS02175 (OHP003_04470) - 448109..448447 (+) 339 WP_017283991.1 hypothetical protein -
  LDM86_RS02180 (OHP003_04480) - 448431..448991 (+) 561 WP_223889396.1 hypothetical protein -
  LDM86_RS02185 (OHP003_04490) - 449002..449496 (+) 495 WP_223889397.1 glycoside hydrolase family protein -
  LDM86_RS02190 - 449516..449677 (+) 162 WP_223889398.1 lysozyme -
  LDM86_RS07705 - 449727..449852 (+) 126 WP_317983374.1 hypothetical protein -
  LDM86_RS02195 - 450009..450390 (+) 382 Protein_435 DUF1294 domain-containing protein -
  LDM86_RS02200 - 450390..451175 (+) 786 WP_223889399.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15147.72 Da        Isoelectric Point: 9.6518

>NTDB_id=89692 LDM86_RS02165 WP_223889395.1 446593..446997(+) (dprB) [Helicobacter pylori strain #3]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=89692 LDM86_RS02165 WP_223889395.1 446593..446997(+) (dprB) [Helicobacter pylori strain #3]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAATGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment