Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   R3O66_RS00250 Genome accession   NZ_CP137209
Coordinates   49303..50655 (-) Length   450 a.a.
NCBI ID   WP_339035934.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain 9VPs_Sm2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 44303..55655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3O66_RS00215 (R3O66_00215) - 45050..45139 (-) 90 WP_081332980.1 hypothetical protein -
  R3O66_RS00220 (R3O66_00220) - 45254..45700 (-) 447 WP_339035926.1 JAB domain-containing protein -
  R3O66_RS00225 (R3O66_00225) - 45693..45899 (-) 207 WP_339035928.1 hypothetical protein -
  R3O66_RS00230 (R3O66_00230) - 45901..46422 (-) 522 WP_339035930.1 DUF1643 domain-containing protein -
  R3O66_RS00235 (R3O66_00235) - 46440..46751 (-) 312 WP_017723707.1 DUF960 family protein -
  R3O66_RS00240 (R3O66_00240) - 46836..47186 (-) 351 WP_339036862.1 SAUGI family uracil-DNA glycosylase inhibitor -
  R3O66_RS00245 (R3O66_00245) ccrB 47655..49286 (-) 1632 WP_339035933.1 recombinase family protein Machinery gene
  R3O66_RS00250 (R3O66_00250) ccrA 49303..50655 (-) 1353 WP_339035934.1 recombinase family protein Machinery gene
  R3O66_RS00255 (R3O66_00255) - 50834..51124 (-) 291 WP_339035936.1 hypothetical protein -
  R3O66_RS00260 (R3O66_00260) - 51214..53001 (-) 1788 WP_339035938.1 DUF927 domain-containing protein -
  R3O66_RS00265 (R3O66_00265) - 53003..53239 (-) 237 WP_217874058.1 DUF1413 domain-containing protein -
  R3O66_RS00270 (R3O66_00270) - 53442..54980 (-) 1539 WP_339035941.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 52493.12 Da        Isoelectric Point: 9.9354

>NTDB_id=896882 R3O66_RS00250 WP_339035934.1 49303..50655(-) (ccrA) [Mammaliicoccus sciuri strain 9VPs_Sm2]
MKQAIGYLRQSTLKQQSLTAQKQTIETLAKKYNIQHITFYSDKQSGRTDNRTGYQQVIERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYH
NGTFTINQDEASTVKAIFHYYLQGYGYKKIAQYLETDNQNINRKPYQVRAIIMNPNYCGRVINQYGKYDNMFPPIISISS
YEQAQILRSEKHVKRTPSANQLKQKIKCPCCSSTLTNMTIRNKQHNTLRYYVCPRNMNESRFVCDFKGINAKDIETSVLT
TCRHFFQDQQVYSKINDAIQQHIQKQNTLETKRTYTQAQLINKLAKGTIDAEIFKTEIQNLHQQNTLTSINSKRIQSAFH
NVIQKCFTLNILYPYIDVIHITENKTLTGIYFKNEPLNIVNQTKQSSIVS

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=896882 R3O66_RS00250 WP_339035934.1 49303..50655(-) (ccrA) [Mammaliicoccus sciuri strain 9VPs_Sm2]
ATGAAACAAGCTATCGGTTACTTACGTCAAAGTACACTCAAACAACAATCACTCACTGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCACCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACGGGTT
ACCAACAAGTTATCGAACGCATTCAACAAAGACAATGTGATGTATTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTCTGTCAAAAATATCATGTTCATATTCTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAGCTCAATATATTCATAAGCCTCGCAGAATTAGAGTCTGATAATATTGGTGAAC
AAGTCAAGAATGGCCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACAACACATGCACCATTTGGCTATACCTATCAC
AATGGTACATTCACAATTAATCAAGATGAAGCTTCAACGGTGAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAAAAAATTGCGCAATACCTAGAAACAGATAATCAAAACATCAATCGTAAACCCTACCAAGTACGCGCTATTATCATGA
ATCCTAATTACTGTGGTCGCGTTATCAATCAATATGGAAAATATGACAACATGTTTCCACCTATTATTTCTATCAGTAGC
TATGAACAAGCGCAGATTTTACGTTCTGAAAAACATGTCAAACGAACACCTTCAGCTAATCAACTGAAACAAAAAATCAA
ATGTCCATGTTGTAGCTCAACACTCACCAATATGACAATCAGAAACAAACAACATAATACATTACGTTATTATGTCTGTC
CTCGAAATATGAATGAATCTCGTTTTGTCTGTGACTTTAAAGGGATTAACGCTAAAGATATAGAAACAAGTGTTTTAACA
ACATGTCGACACTTCTTTCAAGACCAACAGGTCTATTCCAAAATAAATGATGCCATTCAACAACACATCCAAAAACAAAA
CACACTGGAAACTAAGCGCACGTACACCCAAGCACAACTCATCAATAAGTTAGCCAAAGGAACGATAGATGCAGAAATAT
TCAAAACAGAAATACAAAACTTACACCAACAAAATACACTGACATCTATCAATTCTAAGCGCATCCAAAGCGCATTTCAT
AATGTAATACAAAAATGTTTCACGTTAAACATCTTGTATCCTTATATTGATGTCATTCATATTACTGAAAACAAGACACT
TACAGGTATTTATTTCAAAAATGAACCACTGAATATCGTTAATCAAACTAAACAATCATCGATTGTATCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

75.556

100

0.756
  ccrA Staphylococcus aureus N315

71.778

100

0.718