Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   R3O66_RS00245 Genome accession   NZ_CP137209
Coordinates   47655..49286 (-) Length   543 a.a.
NCBI ID   WP_339035933.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain 9VPs_Sm2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42655..54286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3O66_RS00205 (R3O66_00205) - 43153..43431 (-) 279 WP_069826397.1 hypothetical protein -
  R3O66_RS00210 (R3O66_00210) - 44125..44517 (-) 393 WP_069826396.1 recombinase family protein -
  R3O66_RS00215 (R3O66_00215) - 45050..45139 (-) 90 WP_081332980.1 hypothetical protein -
  R3O66_RS00220 (R3O66_00220) - 45254..45700 (-) 447 WP_339035926.1 JAB domain-containing protein -
  R3O66_RS00225 (R3O66_00225) - 45693..45899 (-) 207 WP_339035928.1 hypothetical protein -
  R3O66_RS00230 (R3O66_00230) - 45901..46422 (-) 522 WP_339035930.1 DUF1643 domain-containing protein -
  R3O66_RS00235 (R3O66_00235) - 46440..46751 (-) 312 WP_017723707.1 DUF960 family protein -
  R3O66_RS00240 (R3O66_00240) - 46836..47186 (-) 351 WP_339036862.1 SAUGI family uracil-DNA glycosylase inhibitor -
  R3O66_RS00245 (R3O66_00245) ccrB 47655..49286 (-) 1632 WP_339035933.1 recombinase family protein Machinery gene
  R3O66_RS00250 (R3O66_00250) ccrA 49303..50655 (-) 1353 WP_339035934.1 recombinase family protein Machinery gene
  R3O66_RS00255 (R3O66_00255) - 50834..51124 (-) 291 WP_339035936.1 hypothetical protein -
  R3O66_RS00260 (R3O66_00260) - 51214..53001 (-) 1788 WP_339035938.1 DUF927 domain-containing protein -
  R3O66_RS00265 (R3O66_00265) - 53003..53239 (-) 237 WP_217874058.1 DUF1413 domain-containing protein -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 62416.37 Da        Isoelectric Point: 9.6343

>NTDB_id=896881 R3O66_RS00245 WP_339035933.1 47655..49286(-) (ccrB) [Mammaliicoccus sciuri strain 9VPs_Sm2]
MEKLKQKRVGIYVRVSTEMQSSEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPALQRMLQDAKNGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVSTSSGKLMLQVLASFAEFERNNIVDNIFMGQTIRAKEGYYQGN
IPYAYDKVPDSKHELMINQHEANVVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYVGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQTLWDKVQARKKQVSEKPQVHGKGTNLLTGLISCERCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLENLIKTLEDNPDLTSVLKNTIHQYEKQLNDITNQINQLKQQQSAPKTIYDANEIATILRHIFKNIEIMDKAQLK
ALYLTVIDHIDIRKDDHHKKQFYVTLKLNHEIIKQLFHNTPLDEVQLSTSSLLLSQTLYLPIS

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=896881 R3O66_RS00245 WP_339035933.1 47655..49286(-) (ccrB) [Mammaliicoccus sciuri strain 9VPs_Sm2]
ATGGAAAAACTTAAACAAAAGCGTGTAGGAATTTATGTACGCGTATCGACTGAGATGCAGAGCTCAGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTATACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGCACTACAACGTATGTTACAAGACGCTAAAAATGGTCATATCGATTGTGTTATG
GTCTACAAAACAAATCGATTAGCACGTAATACATCTGACCTACTCAAAATCGTTGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTCTGTCTGAACGTATGGAAGTTAGCACGAGTAGTGGTAAGCTCATGCTCCAAGTGCTTGCGAGCTTCGCAG
AATTTGAACGCAATAATATTGTAGACAATATATTTATGGGCCAGACAATTAGAGCGAAAGAAGGGTATTATCAGGGTAAT
ATTCCCTATGCGTATGATAAAGTACCTGACAGTAAACACGAACTTATGATTAATCAACATGAAGCCAATGTCGTAAAGTA
TATCTTCGAATCATATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATGCGCTCAACCATAAAGGTTATGTCACAAAGA
AAGGGAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCTAATCCCTTCTATGTCGGTAAAATACAATTCGCGAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGGTTAAATGATAAACCCGTAATTGCCGAAGGCAAACACACCCCTATTAT
TAGCCAAACATTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTACATGGTAAAGGAACCA
ACCTTTTGACTGGATTAATTTCGTGTGAAAGATGTGGAGCGGCATACGCAGCATCGAATACAACGAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATCGTTAAAAGTGACAAAGTTATCAAACAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGAAAACTTGATCAAAACACTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATCACAAATCAAATCAATCAACTTAAGCAACAACAAAGTGCTCCCAAAACAA
TATATGACGCTAATGAGATTGCGACTATATTACGTCATATATTCAAAAATATCGAAATCATGGATAAAGCACAACTCAAA
GCACTATACCTTACAGTCATAGACCACATTGATATTCGTAAAGACGACCATCATAAAAAGCAGTTCTATGTCACATTAAA
ACTCAATCATGAAATCATTAAACAACTCTTCCATAATACCCCTCTCGACGAAGTGCAACTCAGCACTTCGTCTTTATTAT
TATCTCAAACACTCTATTTGCCTATCTCATAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

81.55

99.816

0.814