Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LDN16_RS13500 Genome accession   NZ_AP024961
Coordinates   3042243..3042902 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037243..3047902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS13485 (LEG80045_26310) - 3038179..3038838 (+) 660 WP_027266287.1 hypothetical protein -
  LDN16_RS13490 (LEG80045_26320) lcl 3039005..3040351 (+) 1347 WP_134984243.1 collagen-like adhesin Lcl -
  LDN16_RS13495 (LEG80045_26330) uvrC 3040375..3042231 (-) 1857 WP_027266286.1 excinuclease ABC subunit UvrC -
  LDN16_RS13500 (LEG80045_26340) letA 3042243..3042902 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  LDN16_RS13505 (LEG80045_26350) phhA 3043027..3043845 (-) 819 WP_027266285.1 phenylalanine 4-monooxygenase -
  LDN16_RS13510 (LEG80045_26360) - 3044285..3045382 (+) 1098 WP_014842695.1 molybdopterin-binding protein -
  LDN16_RS13515 (LEG80045_26370) cgtA 3045341..3046366 (-) 1026 WP_027266284.1 Obg family GTPase CgtA -
  LDN16_RS13520 (LEG80045_26380) rpmA 3046581..3046859 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  LDN16_RS13525 (LEG80045_26390) rplU 3046872..3047183 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=89678 LDN16_RS13500 WP_011216518.1 3042243..3042902(-) (letA) [Legionella pneumophila strain 80-045]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=89678 LDN16_RS13500 WP_011216518.1 3042243..3042902(-) (letA) [Legionella pneumophila strain 80-045]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTGGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGCGCTATGGGATACCTTACTAAAGAATCAGG
GGCAGAGGAAATGGCTGCCGCAATTCGTAAAGTGGCCAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCCGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment